Gene annotation
Transcriptome id Sobic.001G177300.1,Sobic.001G177300.4,Sobic.001G177300.3,Sobic.001G177300.2
Synonym Sb01g015430
Functional annotation frigida, putative, expressed
UniProt A0A1Z5S658 , A0A1Z5S6H4 , C5WTC5
Pfam PF07899
Panther DB PTHR31791 PTHR31791:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48385 : FRIGIDA-like protein
RAP-DB (Rice) LOC_Os03g39129.1 : frigida, putative, expressed
MaizeGDB (Corn) Zm00025a017342
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G177300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G351800 PPR repeat containing protein, expressed -
2 Sobic.009G083400 RNA recognition motif family protein, expressed -
3 Sobic.003G067201 - -
4 Sobic.002G052400 PPR repeat containing protein, expressed -
5 Sobic.002G154400 MIM, putative, expressed -
6 Sobic.002G180900 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
8 Sobic.008G017900 expressed protein -
9 Sobic.003G218200 pentatricopeptide containing protein, putative, expressed -
10 Sobic.007G053700 MYB family transcription factor, putative, expressed -
11 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
12 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
13 Sobic.004G149800 transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters(PubMedID : 23184965)@hhH-GPD superfamily base excision DNA repair protein, expressed -
14 Sobic.001G326300 PPR repeat domain containing protein, putative, expressed -
15 Sobic.003G089200 expressed protein -
16 Sobic.009G034100 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
17 Sobic.002G263700 bromodomain protein 103, putative, expressed -
18 Sobic.009G122800 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
19 Sobic.009G042100 MA3 domain containing protein, expressed K17583: nucleolar MIF4G domain-containing protein 1
20 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1


Gene co-expression network
sample Sobic001G177300 Sobic001G177300 Sobic004G351800 Sobic004G351800 Sobic001G177300--Sobic004G351800 Sobic009G083400 Sobic009G083400 Sobic001G177300--Sobic009G083400 Sobic003G067201 Sobic003G067201 Sobic001G177300--Sobic003G067201 Sobic002G052400 Sobic002G052400 Sobic001G177300--Sobic002G052400 Sobic002G154400 Sobic002G154400 Sobic001G177300--Sobic002G154400 Sobic002G180900 Sobic002G180900 Sobic001G177300--Sobic002G180900 Sobic001G382500 Sobic001G382500 Sobic001G177300--Sobic001G382500 Sobic008G017900 Sobic008G017900 Sobic001G177300--Sobic008G017900 Sobic003G218200 Sobic003G218200 Sobic001G177300--Sobic003G218200 Sobic001G417500 Sobic001G417500 Sobic004G351800--Sobic001G417500 Sobic008G017100 Sobic008G017100 Sobic004G351800--Sobic008G017100 Sobic001G261900 Sobic001G261900 Sobic004G351800--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G351800--Sobic006G269800 Sobic004G107200 Sobic004G107200 Sobic004G351800--Sobic004G107200 Sobic004G351800--Sobic002G052400 Sobic001G326300 Sobic001G326300 Sobic004G351800--Sobic001G326300 Sobic007G173500 Sobic007G173500 Sobic004G351800--Sobic007G173500 Sobic006G128400 Sobic006G128400 Sobic004G351800--Sobic006G128400 Sobic006G251900 Sobic006G251900 Sobic009G083400--Sobic006G251900 Sobic010G224300 Sobic010G224300 Sobic009G083400--Sobic010G224300 Sobic002G127100 Sobic002G127100 Sobic009G083400--Sobic002G127100 Sobic007G004000 Sobic007G004000 Sobic009G083400--Sobic007G004000 Sobic004G102000 Sobic004G102000 Sobic009G083400--Sobic004G102000 Sobic004G216500 Sobic004G216500 Sobic009G083400--Sobic004G216500 Sobic006G161000 Sobic006G161000 Sobic009G083400--Sobic006G161000 Sobic002G278000 Sobic002G278000 Sobic009G083400--Sobic002G278000 Sobic001G347300 Sobic001G347300 Sobic009G083400--Sobic001G347300 Sobic003G397100 Sobic003G397100 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic002G084400 Sobic002G084400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500 Sobic002G052400--Sobic004G351800 Sobic002G052400--Sobic008G017100 Sobic002G377800 Sobic002G377800 Sobic002G052400--Sobic002G377800 Sobic009G105200 Sobic009G105200 Sobic002G052400--Sobic009G105200 Sobic007G145100 Sobic007G145100 Sobic002G052400--Sobic007G145100 Sobic002G052400--Sobic001G261900 Sobic002G373950 Sobic002G373950 Sobic002G052400--Sobic002G373950 Sobic008G022701 Sobic008G022701 Sobic002G052400--Sobic008G022701 Sobic010G228700 Sobic010G228700 Sobic002G052400--Sobic010G228700 Sobic009G042100 Sobic009G042100 Sobic002G154400--Sobic009G042100 Sobic007G039300 Sobic007G039300 Sobic002G154400--Sobic007G039300 Sobic007G053700 Sobic007G053700 Sobic002G154400--Sobic007G053700 Sobic003G349000 Sobic003G349000 Sobic002G154400--Sobic003G349000 Sobic010G240800 Sobic010G240800 Sobic002G154400--Sobic010G240800 Sobic004G020900 Sobic004G020900 Sobic002G154400--Sobic004G020900 Sobic009G032200 Sobic009G032200 Sobic002G154400--Sobic009G032200 Sobic002G154400--Sobic008G017900 Sobic009G069200 Sobic009G069200 Sobic002G154400--Sobic009G069200 Sobic002G180900--Sobic008G017900 Sobic005G123400 Sobic005G123400 Sobic002G180900--Sobic005G123400 Sobic003G113300 Sobic003G113300 Sobic002G180900--Sobic003G113300 Sobic002G180900--Sobic006G191200 Sobic006G170900 Sobic006G170900 Sobic002G180900--Sobic006G170900 Sobic010G112600 Sobic010G112600 Sobic002G180900--Sobic010G112600 Sobic001G051400 Sobic001G051400 Sobic002G180900--Sobic001G051400 Sobic001G306800 Sobic001G306800 Sobic002G180900--Sobic001G306800 Sobic010G091400 Sobic010G091400 Sobic002G180900--Sobic010G091400 Sobic001G173800 Sobic001G173800 Sobic001G382500--Sobic001G173800 Sobic009G235200 Sobic009G235200 Sobic001G382500--Sobic009G235200 Sobic009G173600 Sobic009G173600 Sobic001G382500--Sobic009G173600 Sobic006G245800 Sobic006G245800 Sobic001G382500--Sobic006G245800 Sobic001G501400 Sobic001G501400 Sobic001G382500--Sobic001G501400 Sobic003G156500 Sobic003G156500 Sobic001G382500--Sobic003G156500 Sobic009G217200 Sobic009G217200 Sobic001G382500--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic001G382500--Sobic001G453400 Sobic010G114900 Sobic010G114900 Sobic001G382500--Sobic010G114900 Sobic008G017900--Sobic004G020900 Sobic008G017900--Sobic002G180900 Sobic008G017900--Sobic007G039300 Sobic009G190200 Sobic009G190200 Sobic008G017900--Sobic009G190200 Sobic002G263700 Sobic002G263700 Sobic008G017900--Sobic002G263700 Sobic008G017900--Sobic009G069200 Sobic008G017900--Sobic002G154400 Sobic008G017900--Sobic006G191200 Sobic008G017900--Sobic003G124600 Sobic003G218200--Sobic010G091400 Sobic004G097900 Sobic004G097900 Sobic003G218200--Sobic004G097900 Sobic002G364900 Sobic002G364900 Sobic003G218200--Sobic002G364900 Sobic003G297700 Sobic003G297700 Sobic003G218200--Sobic003G297700 Sobic002G386900 Sobic002G386900 Sobic003G218200--Sobic002G386900 Sobic003G218200--Sobic006G191200 Sobic001G466500 Sobic001G466500 Sobic003G218200--Sobic001G466500 Sobic002G386600 Sobic002G386600 Sobic003G218200--Sobic002G386600 Sobic002G398700 Sobic002G398700 Sobic003G218200--Sobic002G398700
Octagon: transcription factors


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