Gene annotation
Transcriptome id Sobic.001G505200.1
Synonym ATRABC2A, ATRAB, ATRABALPHA, ATRAB18B, Sb01g047150, RABC2A
Functional annotation ras-related protein, putative, expressed
UniProt C5WXZ0
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF568
NCBI CDD KOG0080; GTPase Rab18, small G protein superfamily
KEGG Orthology K07910; Ras-related protein Rab-18
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G03530 : RAB GTPase homolog C2A
RAP-DB (Rice) LOC_Os03g05280.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a017694 , Zm00025a053414 , Zm00025a006728
Brachypodium KQK23674 , PNT67481 , KQJ96947
Barley HORVU4Hr1G079250.2 , HORVU4Hr1G079250.1
Wheat TraesCS1B02G158500 , TraesCS1A02G143100 , TraesCS4D02G308700 , TraesCS4B02G310800 , TraesCS1D02G142000 , TraesCS4A02G410700
Populus -


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cDNA sequences
Sobic.001G505200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G051100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.005G180800 thioredoxin domain-containing protein 9, putative, expressed -
3 Sobic.002G247200 jmjC domain-containing protein 5, putative, expressed K10277: KDM8, lysine-specific demethylase 8
4 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
5 Sobic.001G498400 - K18655: DDX19, ATP-dependent RNA helicase DDX19/DBP5
6 Sobic.001G218200 expressed protein -
7 Sobic.004G038000 expressed protein -
8 Sobic.002G388100 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
9 Sobic.001G480800 Protein strubbelig-receptor family 7(PubMedID : 31721651)@STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
10 Sobic.003G320900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
12 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
13 Sobic.001G347400 expressed protein -
14 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
15 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
16 Sobic.001G116100 threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed K01754: E4.3.1.19, ilvA, threonine dehydratase
17 Sobic.010G241600 RNASEH2A - Putative ribonuclease H2 large subunit, expressed K10743: ribonuclease H2 subunit A
18 Sobic.008G099500 - -
19 Sobic.003G321000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed -
20 Sobic.004G242000 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1


Gene co-expression network
sample Sobic001G505200 Sobic001G505200 Sobic003G051100 Sobic003G051100 Sobic001G505200--Sobic003G051100 Sobic005G180800 Sobic005G180800 Sobic001G505200--Sobic005G180800 Sobic002G247200 Sobic002G247200 Sobic001G505200--Sobic002G247200 Sobic003G252900 Sobic003G252900 Sobic001G505200--Sobic003G252900 Sobic001G498400 Sobic001G498400 Sobic001G505200--Sobic001G498400 Sobic001G218200 Sobic001G218200 Sobic001G505200--Sobic001G218200 Sobic004G038000 Sobic004G038000 Sobic001G505200--Sobic004G038000 Sobic002G388100 Sobic002G388100 Sobic001G505200--Sobic002G388100 Sobic001G480800 Sobic001G480800 Sobic001G505200--Sobic001G480800 Sobic004G242000 Sobic004G242000 Sobic003G051100--Sobic004G242000 Sobic001G005800 Sobic001G005800 Sobic003G051100--Sobic001G005800 Sobic009G212100 Sobic009G212100 Sobic003G051100--Sobic009G212100 Sobic009G254000 Sobic009G254000 Sobic003G051100--Sobic009G254000 Sobic009G167100 Sobic009G167100 Sobic003G051100--Sobic009G167100 Sobic007G084200 Sobic007G084200 Sobic003G051100--Sobic007G084200 Sobic006G218900 Sobic006G218900 Sobic003G051100--Sobic006G218900 Sobic004G315700 Sobic004G315700 Sobic003G051100--Sobic004G315700 Sobic003G415100 Sobic003G415100 Sobic003G051100--Sobic003G415100 Sobic005G180800--Sobic003G415100 Sobic002G103700 Sobic002G103700 Sobic005G180800--Sobic002G103700 Sobic005G180800--Sobic001G218200 Sobic006G261100 Sobic006G261100 Sobic005G180800--Sobic006G261100 Sobic009G166200 Sobic009G166200 Sobic005G180800--Sobic009G166200 Sobic004G313300 Sobic004G313300 Sobic005G180800--Sobic004G313300 Sobic001G384600 Sobic001G384600 Sobic005G180800--Sobic001G384600 Sobic005G032400 Sobic005G032400 Sobic005G180800--Sobic005G032400 Sobic005G180800--Sobic002G247200 Sobic002G247200--Sobic003G051100 Sobic001G429200 Sobic001G429200 Sobic002G247200--Sobic001G429200 Sobic001G346700 Sobic001G346700 Sobic002G247200--Sobic001G346700 Sobic008G169800 Sobic008G169800 Sobic002G247200--Sobic008G169800 Sobic002G247200--Sobic003G415100 Sobic001G116100 Sobic001G116100 Sobic002G247200--Sobic001G116100 Sobic002G247200--Sobic005G180800 Sobic006G203200 Sobic006G203200 Sobic002G247200--Sobic006G203200 Sobic002G247200--Sobic001G218200 Sobic008G058700 Sobic008G058700 Sobic003G252900--Sobic008G058700 Sobic003G312400 Sobic003G312400 Sobic003G252900--Sobic003G312400 Sobic003G126800 Sobic003G126800 Sobic003G252900--Sobic003G126800 Sobic003G319000 Sobic003G319000 Sobic003G252900--Sobic003G319000 Sobic003G410400 Sobic003G410400 Sobic003G252900--Sobic003G410400 Sobic001G294600 Sobic001G294600 Sobic003G252900--Sobic001G294600 Sobic006G129000 Sobic006G129000 Sobic003G252900--Sobic006G129000 Sobic009G182200 Sobic009G182200 Sobic003G252900--Sobic009G182200 Sobic010G088300 Sobic010G088300 Sobic003G252900--Sobic010G088300 Sobic001G498400--Sobic008G058700 Sobic003G382900 Sobic003G382900 Sobic001G498400--Sobic003G382900 Sobic002G385300 Sobic002G385300 Sobic001G498400--Sobic002G385300 Sobic001G498400--Sobic006G261100 Sobic008G111700 Sobic008G111700 Sobic001G498400--Sobic008G111700 Sobic003G031200 Sobic003G031200 Sobic001G498400--Sobic003G031200 Sobic003G407900 Sobic003G407900 Sobic001G498400--Sobic003G407900 Sobic003G189700 Sobic003G189700 Sobic001G498400--Sobic003G189700 Sobic002G276900 Sobic002G276900 Sobic001G498400--Sobic002G276900 Sobic001G218200--Sobic001G116100 Sobic001G218200--Sobic006G261100 Sobic001G218200--Sobic005G180800 Sobic002G362300 Sobic002G362300 Sobic001G218200--Sobic002G362300 Sobic001G218200--Sobic002G103700 Sobic004G256200 Sobic004G256200 Sobic001G218200--Sobic004G256200 Sobic005G030300 Sobic005G030300 Sobic001G218200--Sobic005G030300 Sobic002G347700 Sobic002G347700 Sobic001G218200--Sobic002G347700 Sobic007G155900 Sobic007G155900 Sobic001G218200--Sobic007G155900 Sobic004G074200 Sobic004G074200 Sobic004G038000--Sobic004G074200 Sobic002G416200 Sobic002G416200 Sobic004G038000--Sobic002G416200 Sobic007G085350 Sobic007G085350 Sobic004G038000--Sobic007G085350 Sobic002G018600 Sobic002G018600 Sobic004G038000--Sobic002G018600 Sobic002G056600 Sobic002G056600 Sobic004G038000--Sobic002G056600 Sobic010G257400 Sobic010G257400 Sobic004G038000--Sobic010G257400 Sobic007G072800 Sobic007G072800 Sobic004G038000--Sobic007G072800 Sobic009G114600 Sobic009G114600 Sobic004G038000--Sobic009G114600 Sobic005G121100 Sobic005G121100 Sobic004G038000--Sobic005G121100 Sobic002G388100--Sobic004G242000 Sobic002G051200 Sobic002G051200 Sobic002G388100--Sobic002G051200 Sobic010G256200 Sobic010G256200 Sobic002G388100--Sobic010G256200 Sobic001G154400 Sobic001G154400 Sobic002G388100--Sobic001G154400 Sobic001G448200 Sobic001G448200 Sobic002G388100--Sobic001G448200 Sobic002G356800 Sobic002G356800 Sobic002G388100--Sobic002G356800 Sobic004G345100 Sobic004G345100 Sobic002G388100--Sobic004G345100 Sobic001G349400 Sobic001G349400 Sobic002G388100--Sobic001G349400 Sobic006G013900 Sobic006G013900 Sobic002G388100--Sobic006G013900 Sobic002G252000 Sobic002G252000 Sobic001G480800--Sobic002G252000 Sobic004G272200 Sobic004G272200 Sobic001G480800--Sobic004G272200 Sobic001G480800--Sobic003G252900 Sobic001G099100 Sobic001G099100 Sobic001G480800--Sobic001G099100 Sobic002G333800 Sobic002G333800 Sobic001G480800--Sobic002G333800 Sobic009G079100 Sobic009G079100 Sobic001G480800--Sobic009G079100 Sobic002G128800 Sobic002G128800 Sobic001G480800--Sobic002G128800 Sobic002G387600 Sobic002G387600 Sobic001G480800--Sobic002G387600 Sobic004G051300 Sobic004G051300 Sobic001G480800--Sobic004G051300
Octagon: transcription factors


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