Gene annotation
Transcriptome id Sobic.002G054600.4,Sobic.002G054600.5,Sobic.002G054600.3
Synonym Sb02g004570, UNE12
Functional annotation BHLH transcription factor, putative, expressed
UniProt A0A1W0W2G1 , A0A1W0W2E9 , A0A1W0W2H1
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF38 PTHR16223 PTHR16223:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02590 : LJRHL1-like 1,basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g58330.1 : BHLH transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a045188
Brachypodium KQK20576 , KQK20575
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G054600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
2 Sobic.007G054400 FAR1 family protein, expressed -
3 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
4 Sobic.002G166500 protein phosphatase 2C, putative, expressed K17500: integrin-linked kinase-associated serine/threonine phosphatase 2C
5 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
6 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
7 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
8 Sobic.003G173950 - -
9 Sobic.001G433300 SWIM zinc finger family protein, putative, expressed -
10 Sobic.005G198100 FRA10AC1, putative, expressed K13121: protein FRA10AC1
11 Sobic.001G360900 peptidyl-prolyl isomerase PASTICCINO1, putative, expressed -
12 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
13 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
14 Sobic.004G213000 AT hook motif family protein, expressed -
15 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
16 Sobic.001G172200 - -
17 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
18 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
19 Sobic.002G151600 R-interacting factor 1, putative, expressed -
20 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1


Gene co-expression network
sample Sobic002G054600 Sobic002G054600 Sobic003G197800 Sobic003G197800 Sobic002G054600--Sobic003G197800 Sobic007G054400 Sobic007G054400 Sobic002G054600--Sobic007G054400 Sobic001G253200 Sobic001G253200 Sobic002G054600--Sobic001G253200 Sobic002G166500 Sobic002G166500 Sobic002G054600--Sobic002G166500 Sobic004G264300 Sobic004G264300 Sobic002G054600--Sobic004G264300 Sobic001G124000 Sobic001G124000 Sobic002G054600--Sobic001G124000 Sobic008G063000 Sobic008G063000 Sobic002G054600--Sobic008G063000 Sobic003G173950 Sobic003G173950 Sobic002G054600--Sobic003G173950 Sobic001G433300 Sobic001G433300 Sobic002G054600--Sobic001G433300 Sobic002G157000 Sobic002G157000 Sobic003G197800--Sobic002G157000 Sobic002G320500 Sobic002G320500 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic009G065100 Sobic009G065100 Sobic003G197800--Sobic009G065100 Sobic003G197800--Sobic003G173950 Sobic002G248400 Sobic002G248400 Sobic003G197800--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic003G197800--Sobic001G206100 Sobic007G054400--Sobic001G253200 Sobic004G039200 Sobic004G039200 Sobic007G054400--Sobic004G039200 Sobic003G101500 Sobic003G101500 Sobic007G054400--Sobic003G101500 Sobic004G145500 Sobic004G145500 Sobic007G054400--Sobic004G145500 Sobic007G054400--Sobic003G197800 Sobic004G258700 Sobic004G258700 Sobic007G054400--Sobic004G258700 Sobic007G054400--Sobic001G433300 Sobic007G054400--Sobic009G065100 Sobic006G052300 Sobic006G052300 Sobic007G054400--Sobic006G052300 Sobic001G253200--Sobic007G054400 Sobic005G079800 Sobic005G079800 Sobic001G253200--Sobic005G079800 Sobic001G253200--Sobic004G039200 Sobic001G253200--Sobic001G433300 Sobic001G253200--Sobic003G101500 Sobic001G253200--Sobic002G151600 Sobic002G309800 Sobic002G309800 Sobic001G253200--Sobic002G309800 Sobic001G253200--Sobic003G197800 Sobic008G100100 Sobic008G100100 Sobic001G253200--Sobic008G100100 Sobic006G080300 Sobic006G080300 Sobic002G166500--Sobic006G080300 Sobic003G259901 Sobic003G259901 Sobic002G166500--Sobic003G259901 Sobic006G210100 Sobic006G210100 Sobic002G166500--Sobic006G210100 Sobic002G106100 Sobic002G106100 Sobic002G166500--Sobic002G106100 Sobic008G116500 Sobic008G116500 Sobic002G166500--Sobic008G116500 Sobic002G166500--Sobic002G157000 Sobic007G217500 Sobic007G217500 Sobic002G166500--Sobic007G217500 Sobic002G166500--Sobic001G206100 Sobic001G257300 Sobic001G257300 Sobic002G166500--Sobic001G257300 Sobic003G293200 Sobic003G293200 Sobic004G264300--Sobic003G293200 Sobic004G264300--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic004G264300--Sobic007G117400 Sobic004G264300--Sobic006G052300 Sobic004G264300--Sobic004G145500 Sobic004G264300--Sobic007G054400 Sobic009G024000 Sobic009G024000 Sobic004G264300--Sobic009G024000 Sobic004G009600 Sobic004G009600 Sobic004G264300--Sobic004G009600 Sobic004G264300--Sobic001G124000 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic001G124000--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic001G124000--Sobic007G117400 Sobic001G124000--Sobic009G065100 Sobic010G277500 Sobic010G277500 Sobic001G124000--Sobic010G277500 Sobic008G011100 Sobic008G011100 Sobic001G124000--Sobic008G011100 Sobic001G094000 Sobic001G094000 Sobic008G063000--Sobic001G094000 Sobic003G268300 Sobic003G268300 Sobic008G063000--Sobic003G268300 Sobic006G246900 Sobic006G246900 Sobic008G063000--Sobic006G246900 Sobic008G063000--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic008G063000--Sobic003G200200 Sobic008G173900 Sobic008G173900 Sobic008G063000--Sobic008G173900 Sobic002G006900 Sobic002G006900 Sobic008G063000--Sobic002G006900 Sobic002G144933 Sobic002G144933 Sobic008G063000--Sobic002G144933 Sobic008G063000--Sobic004G145500 Sobic001G356500 Sobic001G356500 Sobic003G173950--Sobic001G356500 Sobic003G241200 Sobic003G241200 Sobic003G173950--Sobic003G241200 Sobic003G173950--Sobic003G197800 Sobic003G173950--Sobic002G320500 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic004G084300 Sobic004G084300 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic003G173950--Sobic001G206100 Sobic001G433300--Sobic007G054400 Sobic001G433300--Sobic001G253200 Sobic001G433300--Sobic003G101500 Sobic003G438900 Sobic003G438900 Sobic001G433300--Sobic003G438900 Sobic001G433300--Sobic005G079800 Sobic001G433300--Sobic004G039200 Sobic001G433300--Sobic008G113100 Sobic001G433300--Sobic004G264300 Sobic001G433300--Sobic003G293200
Octagon: transcription factors


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