Gene annotation
Transcriptome id Sobic.002G069900.5,Sobic.002G069900.1,Sobic.002G069900.2,Sobic.002G069900.4,Sobic.002G069900.3
Synonym Sb02g005870
Functional annotation OsFBX230 - F-box domain containing protein, expressed
UniProt A0A1W0W2R7 , A0A1W0W2T2 , C5XCL5
Pfam PF08268 PF00646 PF00646 PF00646 PF08268
Panther DB PTHR32133 PTHR32133:SF143 PTHR32133:SF143 PTHR32133
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G23880 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os07g13890.1 : OsFBX230 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G069900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
2 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
3 Sobic.001G313700 expressed protein -
4 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
5 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
6 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
7 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
8 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
9 Sobic.001G014300 OsFBDUF15 - F-box and DUF domain containing protein, expressed -
10 Sobic.009G020500 expressed protein -
11 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
12 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
13 Sobic.004G051200 WD domain containing protein, putative, expressed -
14 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
16 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
17 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
18 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
19 Sobic.008G099800 expressed protein -
20 Sobic.004G178300 splicing factor U2AF, putative, expressed -


Gene co-expression network
sample Sobic002G069900 Sobic002G069900 Sobic006G174850 Sobic006G174850 Sobic002G069900--Sobic006G174850 Sobic003G163200 Sobic003G163200 Sobic002G069900--Sobic003G163200 Sobic001G313700 Sobic001G313700 Sobic002G069900--Sobic001G313700 Sobic004G088501 Sobic004G088501 Sobic002G069900--Sobic004G088501 Sobic001G263600 Sobic001G263600 Sobic002G069900--Sobic001G263600 Sobic001G273700 Sobic001G273700 Sobic002G069900--Sobic001G273700 Sobic009G126300 Sobic009G126300 Sobic002G069900--Sobic009G126300 Sobic001G030000 Sobic001G030000 Sobic002G069900--Sobic001G030000 Sobic001G014300 Sobic001G014300 Sobic002G069900--Sobic001G014300 Sobic007G218000 Sobic007G218000 Sobic006G174850--Sobic007G218000 Sobic006G131000 Sobic006G131000 Sobic006G174850--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic006G174850--Sobic009G044800 Sobic006G174850--Sobic001G273700 Sobic003G379200 Sobic003G379200 Sobic006G174850--Sobic003G379200 Sobic005G062200 Sobic005G062200 Sobic006G174850--Sobic005G062200 Sobic006G174850--Sobic001G263600 Sobic007G132100 Sobic007G132100 Sobic006G174850--Sobic007G132100 Sobic006G240100 Sobic006G240100 Sobic006G174850--Sobic006G240100 Sobic004G265500 Sobic004G265500 Sobic003G163200--Sobic004G265500 Sobic002G042600 Sobic002G042600 Sobic003G163200--Sobic002G042600 Sobic010G000800 Sobic010G000800 Sobic003G163200--Sobic010G000800 Sobic003G043000 Sobic003G043000 Sobic003G163200--Sobic003G043000 Sobic002G179400 Sobic002G179400 Sobic003G163200--Sobic002G179400 Sobic010G223100 Sobic010G223100 Sobic003G163200--Sobic010G223100 Sobic002G429300 Sobic002G429300 Sobic003G163200--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic003G163200--Sobic006G184900 Sobic004G204100 Sobic004G204100 Sobic003G163200--Sobic004G204100 Sobic003G360400 Sobic003G360400 Sobic001G313700--Sobic003G360400 Sobic002G045600 Sobic002G045600 Sobic001G313700--Sobic002G045600 Sobic001G313700--Sobic009G044800 Sobic010G112100 Sobic010G112100 Sobic001G313700--Sobic010G112100 Sobic003G408600 Sobic003G408600 Sobic001G313700--Sobic003G408600 Sobic001G313700--Sobic001G273700 Sobic002G154000 Sobic002G154000 Sobic001G313700--Sobic002G154000 Sobic008G099800 Sobic008G099800 Sobic001G313700--Sobic008G099800 Sobic001G457900 Sobic001G457900 Sobic001G313700--Sobic001G457900 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic001G493700 Sobic001G493700 Sobic004G088501--Sobic001G493700 Sobic004G088501--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic008G088872 Sobic008G088872 Sobic001G263600--Sobic008G088872 Sobic001G263600--Sobic002G429300 Sobic002G142900 Sobic002G142900 Sobic001G263600--Sobic002G142900 Sobic001G263600--Sobic005G062200 Sobic008G098900 Sobic008G098900 Sobic001G263600--Sobic008G098900 Sobic001G263600--Sobic002G042600 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic009G131300 Sobic009G131300 Sobic001G263600--Sobic009G131300 Sobic007G172200 Sobic007G172200 Sobic001G273700--Sobic007G172200 Sobic001G273700--Sobic001G263600 Sobic001G273700--Sobic008G099800 Sobic001G347500 Sobic001G347500 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic007G163100 Sobic007G163100 Sobic001G273700--Sobic007G163100 Sobic001G273700--Sobic001G457900 Sobic001G273700--Sobic001G313700 Sobic001G273700--Sobic002G042600 Sobic009G182600 Sobic009G182600 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic001G137000 Sobic001G137000 Sobic009G126300--Sobic001G137000 Sobic009G126300--Sobic002G179400 Sobic009G126300--Sobic004G088501 Sobic009G255600 Sobic009G255600 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic002G388500 Sobic002G388500 Sobic009G126300--Sobic002G388500 Sobic001G308400 Sobic001G308400 Sobic001G030000--Sobic001G308400 Sobic004G141800 Sobic004G141800 Sobic001G030000--Sobic004G141800 Sobic010G169900 Sobic010G169900 Sobic001G030000--Sobic010G169900 Sobic001G030000--Sobic003G043000 Sobic001G030000--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G030000--Sobic002G227500 Sobic005G110499 Sobic005G110499 Sobic001G030000--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic001G030000--Sobic003G405500 Sobic001G030000--Sobic003G163200 Sobic008G054600 Sobic008G054600 Sobic001G014300--Sobic008G054600 Sobic003G312700 Sobic003G312700 Sobic001G014300--Sobic003G312700 Sobic002G051750 Sobic002G051750 Sobic001G014300--Sobic002G051750 Sobic004G096400 Sobic004G096400 Sobic001G014300--Sobic004G096400 Sobic001G014300--Sobic004G265500 Sobic006G080400 Sobic006G080400 Sobic001G014300--Sobic006G080400 Sobic001G014300--Sobic003G163200 Sobic001G014300--Sobic002G154000 Sobic001G014300--Sobic006G240100
Octagon: transcription factors


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