Gene annotation
Transcriptome id Sobic.002G228200.1
Synonym
Functional annotation gibberellin receptor GID1L2, putative, expressed
UniProt A0A1B6QCY7
Pfam PF12695
Panther DB PTHR23024 PTHR23024:SF171
NCBI CDD KOG1515; Arylacetamide deacetylase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47480 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g28730.1 : gibberellin receptor GID1L2, putative, expressed
MaizeGDB (Corn) Zm00025a014090
Brachypodium KQJ90538
Barley HORVU3Hr1G101210.1
Wheat TraesCS4A02G183300 , TraesCS4A02G183300 , TraesCS2D02G389500 , TraesCS4D02G130000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G215500 expressed protein -
2 Sobic.003G071600 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K10258: TER, TSC13, very-long-chain enoyl-CoA reductase
3 Sobic.002G145000 DNA-directed RNA polymerase subunit, putative, expressed K03011: RPB3, DNA-directed RNA polymerase II subunit RPB3
4 Sobic.010G091200 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G448700 "TUD1(Ortholog in rice:Hu et al., 2013)"(PubMedID : 31659845)@U-box domain containing protein, expressed -
6 Sobic.003G210900 protein kinase, putative, expressed -
7 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
8 Sobic.001G011300 expressed protein -
9 Sobic.006G181000 -(PubMedID : 23915383)@PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
10 Sobic.006G054300 amidohydrolase family protein, expressed -
11 Sobic.006G195400 expressed protein -
12 Sobic.003G439100 mitochondrial carrier protein, putative, expressed -
13 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
14 Sobic.001G306700 PPR repeat domain containing protein, putative, expressed -
15 Sobic.009G083300 white-brown complex homolog protein 12, putative, expressed -
16 Sobic.003G193700 carbamoyl-phosphate synthase large chain, putative, expressed K01955: carB, carbamoyl-phosphate synthase large subunit
17 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
18 Sobic.006G200800 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
19 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
20 Sobic.002G065200 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G228200 Sobic002G228200 Sobic001G215500 Sobic001G215500 Sobic002G228200--Sobic001G215500 Sobic003G071600 Sobic003G071600 Sobic002G228200--Sobic003G071600 Sobic002G145000 Sobic002G145000 Sobic002G228200--Sobic002G145000 Sobic010G091200 Sobic010G091200 Sobic002G228200--Sobic010G091200 Sobic001G448700 Sobic001G448700 Sobic002G228200--Sobic001G448700 Sobic003G210900 Sobic003G210900 Sobic002G228200--Sobic003G210900 Sobic003G265500 Sobic003G265500 Sobic002G228200--Sobic003G265500 Sobic001G011300 Sobic001G011300 Sobic002G228200--Sobic001G011300 Sobic006G181000 Sobic006G181000 Sobic002G228200--Sobic006G181000 Sobic009G207100 Sobic009G207100 Sobic001G215500--Sobic009G207100 Sobic004G006700 Sobic004G006700 Sobic001G215500--Sobic004G006700 Sobic008G093200 Sobic008G093200 Sobic001G215500--Sobic008G093200 Sobic010G224900 Sobic010G224900 Sobic001G215500--Sobic010G224900 Sobic004G182500 Sobic004G182500 Sobic001G215500--Sobic004G182500 Sobic004G027000 Sobic004G027000 Sobic001G215500--Sobic004G027000 Sobic001G202400 Sobic001G202400 Sobic001G215500--Sobic001G202400 Sobic004G225300 Sobic004G225300 Sobic001G215500--Sobic004G225300 Sobic006G195400 Sobic006G195400 Sobic001G215500--Sobic006G195400 Sobic001G296400 Sobic001G296400 Sobic003G071600--Sobic001G296400 Sobic009G083300 Sobic009G083300 Sobic003G071600--Sobic009G083300 Sobic002G064400 Sobic002G064400 Sobic003G071600--Sobic002G064400 Sobic008G008500 Sobic008G008500 Sobic003G071600--Sobic008G008500 Sobic003G071600--Sobic003G265500 Sobic004G208600 Sobic004G208600 Sobic003G071600--Sobic004G208600 Sobic005G084000 Sobic005G084000 Sobic003G071600--Sobic005G084000 Sobic001G543700 Sobic001G543700 Sobic003G071600--Sobic001G543700 Sobic004G015700 Sobic004G015700 Sobic003G071600--Sobic004G015700 Sobic004G294700 Sobic004G294700 Sobic002G145000--Sobic004G294700 Sobic002G145000--Sobic006G181000 Sobic004G182900 Sobic004G182900 Sobic002G145000--Sobic004G182900 Sobic001G043800 Sobic001G043800 Sobic002G145000--Sobic001G043800 Sobic004G086700 Sobic004G086700 Sobic002G145000--Sobic004G086700 Sobic007G159000 Sobic007G159000 Sobic002G145000--Sobic007G159000 Sobic003G443500 Sobic003G443500 Sobic002G145000--Sobic003G443500 Sobic001G465700 Sobic001G465700 Sobic002G145000--Sobic001G465700 Sobic006G260800 Sobic006G260800 Sobic002G145000--Sobic006G260800 Sobic005G184300 Sobic005G184300 Sobic010G091200--Sobic005G184300 Sobic004G040600 Sobic004G040600 Sobic010G091200--Sobic004G040600 Sobic002G065200 Sobic002G065200 Sobic010G091200--Sobic002G065200 Sobic003G128400 Sobic003G128400 Sobic010G091200--Sobic003G128400 Sobic002G297400 Sobic002G297400 Sobic010G091200--Sobic002G297400 Sobic003G439000 Sobic003G439000 Sobic010G091200--Sobic003G439000 Sobic010G091200--Sobic003G265500 Sobic001G514100 Sobic001G514100 Sobic010G091200--Sobic001G514100 Sobic006G256600 Sobic006G256600 Sobic010G091200--Sobic006G256600 Sobic006G047300 Sobic006G047300 Sobic001G448700--Sobic006G047300 Sobic001G161400 Sobic001G161400 Sobic001G448700--Sobic001G161400 Sobic001G202500 Sobic001G202500 Sobic001G448700--Sobic001G202500 Sobic004G301200 Sobic004G301200 Sobic001G448700--Sobic004G301200 Sobic003G209300 Sobic003G209300 Sobic001G448700--Sobic003G209300 Sobic009G105200 Sobic009G105200 Sobic001G448700--Sobic009G105200 Sobic001G448700--Sobic003G210900 Sobic009G004800 Sobic009G004800 Sobic001G448700--Sobic009G004800 Sobic006G223300 Sobic006G223300 Sobic001G448700--Sobic006G223300 Sobic001G540800 Sobic001G540800 Sobic003G210900--Sobic001G540800 Sobic003G210900--Sobic004G182900 Sobic002G083900 Sobic002G083900 Sobic003G210900--Sobic002G083900 Sobic003G210900--Sobic006G181000 Sobic008G088842 Sobic008G088842 Sobic003G210900--Sobic008G088842 Sobic010G145800 Sobic010G145800 Sobic003G210900--Sobic010G145800 Sobic002G218500 Sobic002G218500 Sobic003G210900--Sobic002G218500 Sobic003G210900--Sobic002G145000 Sobic001G002600 Sobic001G002600 Sobic003G210900--Sobic001G002600 Sobic003G225100 Sobic003G225100 Sobic003G265500--Sobic003G225100 Sobic003G265500--Sobic005G184300 Sobic003G085000 Sobic003G085000 Sobic003G265500--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic003G265500--Sobic001G424300 Sobic010G221600 Sobic010G221600 Sobic003G265500--Sobic010G221600 Sobic004G307400 Sobic004G307400 Sobic003G265500--Sobic004G307400 Sobic004G065300 Sobic004G065300 Sobic003G265500--Sobic004G065300 Sobic002G353300 Sobic002G353300 Sobic003G265500--Sobic002G353300 Sobic001G104800 Sobic001G104800 Sobic003G265500--Sobic001G104800 Sobic001G306700 Sobic001G306700 Sobic001G011300--Sobic001G306700 Sobic001G011300--Sobic003G265500 Sobic004G070800 Sobic004G070800 Sobic001G011300--Sobic004G070800 Sobic001G011300--Sobic010G091200 Sobic001G463500 Sobic001G463500 Sobic001G011300--Sobic001G463500 Sobic003G420900 Sobic003G420900 Sobic001G011300--Sobic003G420900 Sobic001G008700 Sobic001G008700 Sobic001G011300--Sobic001G008700 Sobic004G068300 Sobic004G068300 Sobic001G011300--Sobic004G068300 Sobic001G011300--Sobic004G015700 Sobic006G181000--Sobic004G294700 Sobic002G296100 Sobic002G296100 Sobic006G181000--Sobic002G296100 Sobic006G181000--Sobic002G145000 Sobic007G029700 Sobic007G029700 Sobic006G181000--Sobic007G029700 Sobic006G181000--Sobic004G182900 Sobic006G181000--Sobic002G218500 Sobic001G037500 Sobic001G037500 Sobic006G181000--Sobic001G037500 Sobic010G016900 Sobic010G016900 Sobic006G181000--Sobic010G016900 Sobic008G001900 Sobic008G001900 Sobic006G181000--Sobic008G001900
Octagon: transcription factors


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