Gene annotation
Transcriptome id Sobic.003G059300.1
Synonym Sb03g005090, RLP7, AtRLP7
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Up-reguralion under heat (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
verticillium wilt disease resistance protein, putative, expressed
UniProt C5XNL3
Pfam PF13855 PF00560 PF08263
Panther DB PTHR27004:SF9 PTHR27004
NCBI CDD KOG0472; Leucine-rich repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G15080 : receptor like protein 19
RAP-DB (Rice) LOC_Os04g28210.1 : verticillium wilt disease resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a023346
Brachypodium -
Barley HORVU4Hr1G090020.1 , HORVU4Hr1G090020.2
Wheat TraesCS1D02G433800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G146100 Os4bglu18 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
2 Sobic.007G220000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@C3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
3 Sobic.001G092000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G000100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
5 Sobic.010G165300 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
6 Sobic.010G220000 MYB family transcription factor, putative, expressed -
7 Sobic.001G292000 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
8 Sobic.009G097300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
9 Sobic.010G199900 extracellular ligand-gated ion channel, putative, expressed -
10 Sobic.008G003700 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
11 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
12 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
13 Sobic.001G481900 SAC domain containing protein, putative, expressed -
14 Sobic.010G072400 SAC domain containing protein, putative, expressed -
15 Sobic.001G409300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphatidylinositol transfer protein alpha isoform, putative, expressed -
16 Sobic.003G169500 agenet domain containing protein, putative, expressed -
17 Sobic.006G000300 - -
18 Sobic.003G275700 myosin head family protein, expressed K10357: myosin V
19 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
20 Sobic.003G242000 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase


Gene co-expression network
sample Sobic003G059300 Sobic003G059300 Sobic006G146100 Sobic006G146100 Sobic003G059300--Sobic006G146100 Sobic007G220000 Sobic007G220000 Sobic003G059300--Sobic007G220000 Sobic001G092000 Sobic001G092000 Sobic003G059300--Sobic001G092000 Sobic006G000100 Sobic006G000100 Sobic003G059300--Sobic006G000100 Sobic010G165300 Sobic010G165300 Sobic003G059300--Sobic010G165300 Sobic010G220000 Sobic010G220000 Sobic003G059300--Sobic010G220000 Sobic001G292000 Sobic001G292000 Sobic003G059300--Sobic001G292000 Sobic009G097300 Sobic009G097300 Sobic003G059300--Sobic009G097300 Sobic010G199900 Sobic010G199900 Sobic003G059300--Sobic010G199900 Sobic001G235500 Sobic001G235500 Sobic006G146100--Sobic001G235500 Sobic006G146100--Sobic001G092000 Sobic009G038501 Sobic009G038501 Sobic006G146100--Sobic009G038501 Sobic001G217400 Sobic001G217400 Sobic006G146100--Sobic001G217400 Sobic005G215766 Sobic005G215766 Sobic006G146100--Sobic005G215766 Sobic006G146100--Sobic003G059300 Sobic008G144500 Sobic008G144500 Sobic006G146100--Sobic008G144500 Sobic009G197700 Sobic009G197700 Sobic006G146100--Sobic009G197700 Sobic003G360900 Sobic003G360900 Sobic006G146100--Sobic003G360900 Sobic004G265800 Sobic004G265800 Sobic007G220000--Sobic004G265800 Sobic007G004500 Sobic007G004500 Sobic007G220000--Sobic007G004500 Sobic003G129600 Sobic003G129600 Sobic007G220000--Sobic003G129600 Sobic007G220000--Sobic003G059300 Sobic003G320700 Sobic003G320700 Sobic007G220000--Sobic003G320700 Sobic004G329300 Sobic004G329300 Sobic007G220000--Sobic004G329300 Sobic007G220000--Sobic006G146100 Sobic001G517800 Sobic001G517800 Sobic007G220000--Sobic001G517800 Sobic001G462500 Sobic001G462500 Sobic007G220000--Sobic001G462500 Sobic002G274800 Sobic002G274800 Sobic001G092000--Sobic002G274800 Sobic001G409300 Sobic001G409300 Sobic001G092000--Sobic001G409300 Sobic003G252300 Sobic003G252300 Sobic001G092000--Sobic003G252300 Sobic001G092000--Sobic001G235500 Sobic001G092000--Sobic006G146100 Sobic006G125400 Sobic006G125400 Sobic001G092000--Sobic006G125400 Sobic003G281900 Sobic003G281900 Sobic001G092000--Sobic003G281900 Sobic001G092000--Sobic001G217400 Sobic003G269800 Sobic003G269800 Sobic001G092000--Sobic003G269800 Sobic006G000300 Sobic006G000300 Sobic006G000100--Sobic006G000300 Sobic008G003700 Sobic008G003700 Sobic006G000100--Sobic008G003700 Sobic006G000100--Sobic004G329300 Sobic006G002000 Sobic006G002000 Sobic006G000100--Sobic006G002000 Sobic004G296400 Sobic004G296400 Sobic006G000100--Sobic004G296400 Sobic003G242000 Sobic003G242000 Sobic006G000100--Sobic003G242000 Sobic010G072400 Sobic010G072400 Sobic006G000100--Sobic010G072400 Sobic006G000100--Sobic007G004500 Sobic006G000100--Sobic010G220000 Sobic010G140500 Sobic010G140500 Sobic010G165300--Sobic010G140500 Sobic002G028700 Sobic002G028700 Sobic010G165300--Sobic002G028700 Sobic003G397500 Sobic003G397500 Sobic010G165300--Sobic003G397500 Sobic006G175900 Sobic006G175900 Sobic010G165300--Sobic006G175900 Sobic003G336100 Sobic003G336100 Sobic010G165300--Sobic003G336100 Sobic003G036600 Sobic003G036600 Sobic010G165300--Sobic003G036600 Sobic001G426800 Sobic001G426800 Sobic010G165300--Sobic001G426800 Sobic003G126300 Sobic003G126300 Sobic010G165300--Sobic003G126300 Sobic010G165300--Sobic001G409300 Sobic008G059100 Sobic008G059100 Sobic010G220000--Sobic008G059100 Sobic010G220000--Sobic001G462500 Sobic002G187700 Sobic002G187700 Sobic010G220000--Sobic002G187700 Sobic010G220000--Sobic003G126300 Sobic002G266000 Sobic002G266000 Sobic010G220000--Sobic002G266000 Sobic001G481900 Sobic001G481900 Sobic010G220000--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic010G220000--Sobic004G233200 Sobic010G220000--Sobic001G409300 Sobic006G087700 Sobic006G087700 Sobic010G220000--Sobic006G087700 Sobic003G313900 Sobic003G313900 Sobic001G292000--Sobic003G313900 Sobic009G190600 Sobic009G190600 Sobic001G292000--Sobic009G190600 Sobic005G062700 Sobic005G062700 Sobic001G292000--Sobic005G062700 Sobic003G437800 Sobic003G437800 Sobic001G292000--Sobic003G437800 Sobic003G051000 Sobic003G051000 Sobic001G292000--Sobic003G051000 Sobic003G425300 Sobic003G425300 Sobic001G292000--Sobic003G425300 Sobic008G089900 Sobic008G089900 Sobic001G292000--Sobic008G089900 Sobic001G104900 Sobic001G104900 Sobic001G292000--Sobic001G104900 Sobic009G129800 Sobic009G129800 Sobic001G292000--Sobic009G129800 Sobic003G137900 Sobic003G137900 Sobic009G097300--Sobic003G137900 Sobic009G097300--Sobic005G215766 Sobic003G397400 Sobic003G397400 Sobic009G097300--Sobic003G397400 Sobic006G272700 Sobic006G272700 Sobic009G097300--Sobic006G272700 Sobic009G097300--Sobic003G281900 Sobic003G064300 Sobic003G064300 Sobic009G097300--Sobic003G064300 Sobic009G076700 Sobic009G076700 Sobic009G097300--Sobic009G076700 Sobic007G073750 Sobic007G073750 Sobic009G097300--Sobic007G073750 Sobic007G143200 Sobic007G143200 Sobic009G097300--Sobic007G143200 Sobic010G046700 Sobic010G046700 Sobic010G199900--Sobic010G046700 Sobic008G075600 Sobic008G075600 Sobic010G199900--Sobic008G075600 Sobic004G340800 Sobic004G340800 Sobic010G199900--Sobic004G340800 Sobic004G115900 Sobic004G115900 Sobic010G199900--Sobic004G115900 Sobic010G199900--Sobic003G437800 Sobic010G199900--Sobic003G064300 Sobic002G137800 Sobic002G137800 Sobic010G199900--Sobic002G137800 Sobic010G231900 Sobic010G231900 Sobic010G199900--Sobic010G231900 Sobic010G199900--Sobic006G272700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.