Gene annotation
Transcriptome id Sobic.003G330000.1
Synonym EDA14, UTP11, Sb03g037600
Functional annotation U3 small nucleolar RNA-associated protein 11, putative, expressed
UniProt C5XN38
Pfam PF03998
Panther DB PTHR12838
NCBI CDD KOG3237; Uncharacterized conserved protein
KEGG Orthology K14769; U3 small nucleolar RNA-associated protein 11
Gene Ontology GO:0006364; rRNA processing


Orthologs (automatic annotation)
TAIR AT3G60360 : embryo sac development arrest 14
RAP-DB (Rice) LOC_Os01g59500.2 : U3 small nucleolar RNA-associated protein 11, putative, expressed
MaizeGDB (Corn) Zm00025a039818 , Zm00025a022280 , Zm00025a031331
Brachypodium KQJ81788
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G231500 phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed K01923: phosphoribosylaminoimidazole-succinocarboxamide synthase
2 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
3 Sobic.001G431400 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
4 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
5 Sobic.002G389900 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed -
6 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
7 Sobic.010G142700 - -
8 Sobic.003G186700 ubiquitin carboxyl-terminal hydrolase 6, putative, expressed K11843: USP14, ubiquitin carboxyl-terminal hydrolase 14
9 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
10 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
11 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
12 Sobic.004G018000 bifunctional protein folD, putative, expressed -
13 Sobic.008G032900 digestive organ expansion factor, putative, expressed K14774: UTP25, U3 small nucleolar RNA-associated protein 25
14 Sobic.008G116000 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
15 Sobic.006G002201 - -
16 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
17 Sobic.006G213400 bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
18 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
19 Sobic.002G332900 RNA recognition motif containing protein, putative, expressed -
20 Sobic.004G250500 expressed protein -


Gene co-expression network
sample Sobic003G330000 Sobic003G330000 Sobic002G231500 Sobic002G231500 Sobic003G330000--Sobic002G231500 Sobic001G468600 Sobic001G468600 Sobic003G330000--Sobic001G468600 Sobic001G431400 Sobic001G431400 Sobic003G330000--Sobic001G431400 Sobic003G293300 Sobic003G293300 Sobic003G330000--Sobic003G293300 Sobic002G389900 Sobic002G389900 Sobic003G330000--Sobic002G389900 Sobic006G269900 Sobic006G269900 Sobic003G330000--Sobic006G269900 Sobic010G142700 Sobic010G142700 Sobic003G330000--Sobic010G142700 Sobic003G186700 Sobic003G186700 Sobic003G330000--Sobic003G186700 Sobic009G045900 Sobic009G045900 Sobic003G330000--Sobic009G045900 Sobic007G071900 Sobic007G071900 Sobic002G231500--Sobic007G071900 Sobic006G213400 Sobic006G213400 Sobic002G231500--Sobic006G213400 Sobic001G382600 Sobic001G382600 Sobic002G231500--Sobic001G382600 Sobic004G310500 Sobic004G310500 Sobic002G231500--Sobic004G310500 Sobic001G447300 Sobic001G447300 Sobic002G231500--Sobic001G447300 Sobic002G020700 Sobic002G020700 Sobic002G231500--Sobic002G020700 Sobic008G156700 Sobic008G156700 Sobic002G231500--Sobic008G156700 Sobic008G055900 Sobic008G055900 Sobic002G231500--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic002G231500--Sobic008G033500 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic006G002201 Sobic006G002201 Sobic001G468600--Sobic006G002201 Sobic004G216400 Sobic004G216400 Sobic001G468600--Sobic004G216400 Sobic002G332900 Sobic002G332900 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic010G262433 Sobic010G262433 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000 Sobic002G171300 Sobic002G171300 Sobic001G431400--Sobic002G171300 Sobic001G431400--Sobic010G142700 Sobic002G047000 Sobic002G047000 Sobic001G431400--Sobic002G047000 Sobic009G124900 Sobic009G124900 Sobic001G431400--Sobic009G124900 Sobic003G032600 Sobic003G032600 Sobic001G431400--Sobic003G032600 Sobic001G431400--Sobic009G045900 Sobic004G315500 Sobic004G315500 Sobic001G431400--Sobic004G315500 Sobic001G248100 Sobic001G248100 Sobic001G431400--Sobic001G248100 Sobic009G134900 Sobic009G134900 Sobic001G431400--Sobic009G134900 Sobic001G251100 Sobic001G251100 Sobic003G293300--Sobic001G251100 Sobic006G010000 Sobic006G010000 Sobic003G293300--Sobic006G010000 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic002G071000 Sobic002G071000 Sobic003G293300--Sobic002G071000 Sobic001G234200 Sobic001G234200 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic008G116000 Sobic008G116000 Sobic002G389900--Sobic008G116000 Sobic002G311100 Sobic002G311100 Sobic002G389900--Sobic002G311100 Sobic006G196300 Sobic006G196300 Sobic002G389900--Sobic006G196300 Sobic004G252900 Sobic004G252900 Sobic002G389900--Sobic004G252900 Sobic002G389900--Sobic003G293300 Sobic002G263600 Sobic002G263600 Sobic002G389900--Sobic002G263600 Sobic008G054000 Sobic008G054000 Sobic002G389900--Sobic008G054000 Sobic002G389900--Sobic001G251100 Sobic002G389900--Sobic001G333100 Sobic006G084000 Sobic006G084000 Sobic006G269900--Sobic006G084000 Sobic008G160000 Sobic008G160000 Sobic006G269900--Sobic008G160000 Sobic004G256000 Sobic004G256000 Sobic006G269900--Sobic004G256000 Sobic006G010400 Sobic006G010400 Sobic006G269900--Sobic006G010400 Sobic006G269900--Sobic009G249800 Sobic003G407600 Sobic003G407600 Sobic006G269900--Sobic003G407600 Sobic004G252000 Sobic004G252000 Sobic006G269900--Sobic004G252000 Sobic010G247400 Sobic010G247400 Sobic006G269900--Sobic010G247400 Sobic006G269900--Sobic009G045900 Sobic010G142700--Sobic001G431400 Sobic010G142700--Sobic002G047000 Sobic010G142700--Sobic002G231500 Sobic010G142700--Sobic002G389900 Sobic005G189300 Sobic005G189300 Sobic010G142700--Sobic005G189300 Sobic009G016400 Sobic009G016400 Sobic010G142700--Sobic009G016400 Sobic002G112100 Sobic002G112100 Sobic010G142700--Sobic002G112100 Sobic006G057600 Sobic006G057600 Sobic010G142700--Sobic006G057600 Sobic007G197450 Sobic007G197450 Sobic010G142700--Sobic007G197450 Sobic004G082900 Sobic004G082900 Sobic003G186700--Sobic004G082900 Sobic002G419100 Sobic002G419100 Sobic003G186700--Sobic002G419100 Sobic006G044600 Sobic006G044600 Sobic003G186700--Sobic006G044600 Sobic003G280300 Sobic003G280300 Sobic003G186700--Sobic003G280300 Sobic004G176400 Sobic004G176400 Sobic003G186700--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic003G186700--Sobic003G422900 Sobic009G139800 Sobic009G139800 Sobic003G186700--Sobic009G139800 Sobic001G010700 Sobic001G010700 Sobic003G186700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic003G186700--Sobic002G341800 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic009G045900--Sobic002G047000 Sobic002G246700 Sobic002G246700 Sobic009G045900--Sobic002G246700 Sobic002G408900 Sobic002G408900 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic003G314700 Sobic003G314700 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500
Octagon: transcription factors


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