Gene annotation
Transcriptome id Sobic.004G354400.1
Synonym Sb04g038110
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt A0A194YT38
Pfam -
Panther DB PTHR37391 PTHR37391:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19990 : -
RAP-DB (Rice) LOC_Os02g58150.1 : expressed protein
MaizeGDB (Corn) Zm00025a022661
Brachypodium KQK02095
Barley HORVU4Hr1G076610.2 , HORVU4Hr1G076610.1 , HORVU6Hr1G093840.1 , HORVU6Hr1G093840.2 , HORVU6Hr1G093840.3 , HORVU6Hr1G093840.4 , HORVU6Hr1G093840.5 , HORVU6Hr1G093840.6 , HORVU0Hr1G024310.1 , HORVU1Hr1G020520.1
Wheat TraesCS6B02G461200 , TraesCSU02G083300 , TraesCS4D02G293700 , TraesCS6D02G396300
Populus -


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cDNA sequences
Sobic.004G354400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G313400 expressed protein -
2 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
3 Sobic.010G250200 4-amino-4-deoxychorismate synthase, putative, expressed K13950: para-aminobenzoate synthetase
4 Sobic.001G359400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
6 Sobic.010G188400 copine-1, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
7 Sobic.008G191100 nodulin, putative, expressed -
8 Sobic.003G179600 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
9 Sobic.004G163300 protein kinase domain containing protein, expressed K14510: serine/threonine-protein kinase CTR1
10 Sobic.002G333500 serine/threonine-protein kinase receptor precursor, putative, expressed -
11 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
12 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
13 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
14 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
15 Sobic.003G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, putative, expressed -
16 Sobic.009G157900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
18 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
19 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
20 Sobic.004G097400 mitochondrial carrier protein, putative, expressed K15084: SLC25A16, GDA, solute carrier family 25 (mitochondrial carrier protein), member 16


Gene co-expression network
sample Sobic004G354400 Sobic004G354400 Sobic003G313400 Sobic003G313400 Sobic004G354400--Sobic003G313400 Sobic004G295800 Sobic004G295800 Sobic004G354400--Sobic004G295800 Sobic010G250200 Sobic010G250200 Sobic004G354400--Sobic010G250200 Sobic001G359400 Sobic001G359400 Sobic004G354400--Sobic001G359400 Sobic010G078100 Sobic010G078100 Sobic004G354400--Sobic010G078100 Sobic010G188400 Sobic010G188400 Sobic004G354400--Sobic010G188400 Sobic008G191100 Sobic008G191100 Sobic004G354400--Sobic008G191100 Sobic003G179600 Sobic003G179600 Sobic004G354400--Sobic003G179600 Sobic004G163300 Sobic004G163300 Sobic004G354400--Sobic004G163300 Sobic004G358400 Sobic004G358400 Sobic003G313400--Sobic004G358400 Sobic007G203500 Sobic007G203500 Sobic003G313400--Sobic007G203500 Sobic004G002400 Sobic004G002400 Sobic003G313400--Sobic004G002400 Sobic003G331400 Sobic003G331400 Sobic003G313400--Sobic003G331400 Sobic003G313400--Sobic004G354400 Sobic004G002100 Sobic004G002100 Sobic003G313400--Sobic004G002100 Sobic009G229600 Sobic009G229600 Sobic003G313400--Sobic009G229600 Sobic005G026200 Sobic005G026200 Sobic003G313400--Sobic005G026200 Sobic006G245400 Sobic006G245400 Sobic003G313400--Sobic006G245400 Sobic004G295800--Sobic008G191100 Sobic002G132000 Sobic002G132000 Sobic004G295800--Sobic002G132000 Sobic007G024700 Sobic007G024700 Sobic004G295800--Sobic007G024700 Sobic009G121100 Sobic009G121100 Sobic004G295800--Sobic009G121100 Sobic004G006200 Sobic004G006200 Sobic004G295800--Sobic004G006200 Sobic004G021100 Sobic004G021100 Sobic004G295800--Sobic004G021100 Sobic001G373200 Sobic001G373200 Sobic004G295800--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic004G295800--Sobic003G407300 Sobic001G290000 Sobic001G290000 Sobic004G295800--Sobic001G290000 Sobic001G159600 Sobic001G159600 Sobic010G250200--Sobic001G159600 Sobic010G250200--Sobic004G295800 Sobic003G109100 Sobic003G109100 Sobic010G250200--Sobic003G109100 Sobic001G474700 Sobic001G474700 Sobic010G250200--Sobic001G474700 Sobic010G250200--Sobic001G373200 Sobic009G094300 Sobic009G094300 Sobic010G250200--Sobic009G094300 Sobic010G250200--Sobic007G024700 Sobic002G424000 Sobic002G424000 Sobic010G250200--Sobic002G424000 Sobic001G382000 Sobic001G382000 Sobic010G250200--Sobic001G382000 Sobic009G235900 Sobic009G235900 Sobic001G359400--Sobic009G235900 Sobic001G359400--Sobic010G078100 Sobic005G007800 Sobic005G007800 Sobic001G359400--Sobic005G007800 Sobic010G042900 Sobic010G042900 Sobic001G359400--Sobic010G042900 Sobic002G303000 Sobic002G303000 Sobic001G359400--Sobic002G303000 Sobic002G009600 Sobic002G009600 Sobic001G359400--Sobic002G009600 Sobic001G347600 Sobic001G347600 Sobic001G359400--Sobic001G347600 Sobic001G373100 Sobic001G373100 Sobic001G359400--Sobic001G373100 Sobic008G160700 Sobic008G160700 Sobic001G359400--Sobic008G160700 Sobic010G078100--Sobic008G160700 Sobic010G078100--Sobic002G303000 Sobic010G078100--Sobic009G121100 Sobic006G214500 Sobic006G214500 Sobic010G078100--Sobic006G214500 Sobic009G027000 Sobic009G027000 Sobic010G078100--Sobic009G027000 Sobic010G078100--Sobic001G359400 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic010G078100--Sobic004G295800 Sobic010G274500 Sobic010G274500 Sobic010G188400--Sobic010G274500 Sobic007G202600 Sobic007G202600 Sobic010G188400--Sobic007G202600 Sobic008G147700 Sobic008G147700 Sobic010G188400--Sobic008G147700 Sobic001G120300 Sobic001G120300 Sobic010G188400--Sobic001G120300 Sobic001G427100 Sobic001G427100 Sobic010G188400--Sobic001G427100 Sobic003G145900 Sobic003G145900 Sobic010G188400--Sobic003G145900 Sobic003G305200 Sobic003G305200 Sobic010G188400--Sobic003G305200 Sobic009G148300 Sobic009G148300 Sobic010G188400--Sobic009G148300 Sobic010G188400--Sobic002G303000 Sobic008G191100--Sobic004G295800 Sobic008G191100--Sobic001G290000 Sobic008G191100--Sobic002G132000 Sobic008G191100--Sobic006G214500 Sobic008G191100--Sobic001G373200 Sobic003G093300 Sobic003G093300 Sobic008G191100--Sobic003G093300 Sobic003G433100 Sobic003G433100 Sobic008G191100--Sobic003G433100 Sobic008G191100--Sobic007G024700 Sobic009G126900 Sobic009G126900 Sobic008G191100--Sobic009G126900 Sobic003G179600--Sobic010G078100 Sobic003G179600--Sobic010G250200 Sobic003G179600--Sobic004G354400 Sobic006G028200 Sobic006G028200 Sobic003G179600--Sobic006G028200 Sobic003G179600--Sobic002G303000 Sobic001G524200 Sobic001G524200 Sobic003G179600--Sobic001G524200 Sobic003G179600--Sobic003G407300 Sobic003G179600--Sobic004G295800 Sobic003G036900 Sobic003G036900 Sobic003G179600--Sobic003G036900 Sobic002G114800 Sobic002G114800 Sobic004G163300--Sobic002G114800 Sobic009G177400 Sobic009G177400 Sobic004G163300--Sobic009G177400 Sobic004G163300--Sobic004G354400 Sobic001G201500 Sobic001G201500 Sobic004G163300--Sobic001G201500 Sobic010G242900 Sobic010G242900 Sobic004G163300--Sobic010G242900 Sobic004G163300--Sobic003G313400 Sobic009G229300 Sobic009G229300 Sobic004G163300--Sobic009G229300 Sobic002G306700 Sobic002G306700 Sobic004G163300--Sobic002G306700 Sobic001G049200 Sobic001G049200 Sobic004G163300--Sobic001G049200
Octagon: transcription factors


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