Gene annotation
Transcriptome id Sobic.003G036300.2,Sobic.003G036300.1
Synonym Sb03g003240
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxidoreductase, putative, expressed
UniProt A0A1B6Q146 , C5XM01
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF146
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G35190 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os01g09300.2,LOC_Os01g09300.3 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a035805
Brachypodium KQK03100
Barley HORVU3Hr1G019820.1 , HORVU3Hr1G019820.3 , HORVU3Hr1G019820.2 , HORVU3Hr1G019820.5 , HORVU3Hr1G019820.4 , HORVU3Hr1G019820.7 , HORVU3Hr1G019820.6 , HORVU3Hr1G019820.9 , HORVU3Hr1G019820.8 , HORVU3Hr1G019820.14 , HORVU3Hr1G019820.11 , HORVU3Hr1G019820.10 , HORVU3Hr1G019820.13 , HORVU3Hr1G019820.12
Wheat TraesCS3D02G111000 , TraesCS3A02G109200 , TraesCS3A02G109200 , TraesCS3A02G109200 , TraesCS3A02G109200 , TraesCS3B02G128400 , TraesCS3B02G128400 , TraesCS3B02G128400 , TraesCS3B02G128400
Populus -


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cDNA sequences
Sobic.003G036300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G433100 MAC/Perforin domain containing protein, putative, expressed -
2 Sobic.001G173900 ACT domain containing protein, expressed -
3 Sobic.008G191100 nodulin, putative, expressed -
4 Sobic.010G250200 4-amino-4-deoxychorismate synthase, putative, expressed K13950: para-aminobenzoate synthetase
5 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
6 Sobic.003G041000 holocarboxylase synthetase, putative, expressed -
7 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
8 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
9 Sobic.004G354400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
11 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
12 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
13 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.003G081100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsWAK2 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
15 Sobic.008G124500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
16 Sobic.009G167600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
18 Sobic.001G035500 expressed protein -
19 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
20 Sobic.005G143400 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -


Gene co-expression network
sample Sobic003G036300 Sobic003G036300 Sobic003G433100 Sobic003G433100 Sobic003G036300--Sobic003G433100 Sobic001G173900 Sobic001G173900 Sobic003G036300--Sobic001G173900 Sobic008G191100 Sobic008G191100 Sobic003G036300--Sobic008G191100 Sobic010G250200 Sobic010G250200 Sobic003G036300--Sobic010G250200 Sobic001G451000 Sobic001G451000 Sobic003G036300--Sobic001G451000 Sobic003G041000 Sobic003G041000 Sobic003G036300--Sobic003G041000 Sobic004G295800 Sobic004G295800 Sobic003G036300--Sobic004G295800 Sobic010G078100 Sobic010G078100 Sobic003G036300--Sobic010G078100 Sobic004G354400 Sobic004G354400 Sobic003G036300--Sobic004G354400 Sobic009G193400 Sobic009G193400 Sobic003G433100--Sobic009G193400 Sobic001G478300 Sobic001G478300 Sobic003G433100--Sobic001G478300 Sobic007G062600 Sobic007G062600 Sobic003G433100--Sobic007G062600 Sobic003G433100--Sobic004G295800 Sobic004G006200 Sobic004G006200 Sobic003G433100--Sobic004G006200 Sobic009G154800 Sobic009G154800 Sobic003G433100--Sobic009G154800 Sobic009G228700 Sobic009G228700 Sobic003G433100--Sobic009G228700 Sobic002G424000 Sobic002G424000 Sobic003G433100--Sobic002G424000 Sobic004G021100 Sobic004G021100 Sobic003G433100--Sobic004G021100 Sobic004G092100 Sobic004G092100 Sobic001G173900--Sobic004G092100 Sobic007G047700 Sobic007G047700 Sobic001G173900--Sobic007G047700 Sobic003G278500 Sobic003G278500 Sobic001G173900--Sobic003G278500 Sobic003G056100 Sobic003G056100 Sobic001G173900--Sobic003G056100 Sobic001G173900--Sobic008G191100 Sobic003G328600 Sobic003G328600 Sobic001G173900--Sobic003G328600 Sobic003G248200 Sobic003G248200 Sobic001G173900--Sobic003G248200 Sobic009G167600 Sobic009G167600 Sobic001G173900--Sobic009G167600 Sobic002G215100 Sobic002G215100 Sobic001G173900--Sobic002G215100 Sobic008G191100--Sobic004G295800 Sobic001G290000 Sobic001G290000 Sobic008G191100--Sobic001G290000 Sobic002G132000 Sobic002G132000 Sobic008G191100--Sobic002G132000 Sobic006G214500 Sobic006G214500 Sobic008G191100--Sobic006G214500 Sobic001G373200 Sobic001G373200 Sobic008G191100--Sobic001G373200 Sobic003G093300 Sobic003G093300 Sobic008G191100--Sobic003G093300 Sobic008G191100--Sobic003G433100 Sobic007G024700 Sobic007G024700 Sobic008G191100--Sobic007G024700 Sobic009G126900 Sobic009G126900 Sobic008G191100--Sobic009G126900 Sobic001G159600 Sobic001G159600 Sobic010G250200--Sobic001G159600 Sobic010G250200--Sobic004G295800 Sobic003G109100 Sobic003G109100 Sobic010G250200--Sobic003G109100 Sobic001G474700 Sobic001G474700 Sobic010G250200--Sobic001G474700 Sobic010G250200--Sobic001G373200 Sobic009G094300 Sobic009G094300 Sobic010G250200--Sobic009G094300 Sobic010G250200--Sobic007G024700 Sobic010G250200--Sobic002G424000 Sobic001G382000 Sobic001G382000 Sobic010G250200--Sobic001G382000 Sobic005G167300 Sobic005G167300 Sobic001G451000--Sobic005G167300 Sobic002G115801 Sobic002G115801 Sobic001G451000--Sobic002G115801 Sobic010G260500 Sobic010G260500 Sobic001G451000--Sobic010G260500 Sobic002G284200 Sobic002G284200 Sobic001G451000--Sobic002G284200 Sobic003G333600 Sobic003G333600 Sobic001G451000--Sobic003G333600 Sobic007G078000 Sobic007G078000 Sobic001G451000--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic001G451000--Sobic001G439500 Sobic004G198000 Sobic004G198000 Sobic001G451000--Sobic004G198000 Sobic004G196700 Sobic004G196700 Sobic001G451000--Sobic004G196700 Sobic003G041000--Sobic004G196700 Sobic007G185900 Sobic007G185900 Sobic003G041000--Sobic007G185900 Sobic003G041000--Sobic007G078000 Sobic003G397800 Sobic003G397800 Sobic003G041000--Sobic003G397800 Sobic002G001600 Sobic002G001600 Sobic003G041000--Sobic002G001600 Sobic007G137900 Sobic007G137900 Sobic003G041000--Sobic007G137900 Sobic003G041000--Sobic010G260500 Sobic003G041000--Sobic003G333600 Sobic003G041000--Sobic001G451000 Sobic004G295800--Sobic008G191100 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic009G121100 Sobic009G121100 Sobic004G295800--Sobic009G121100 Sobic004G295800--Sobic004G006200 Sobic004G295800--Sobic004G021100 Sobic004G295800--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic004G295800--Sobic003G407300 Sobic004G295800--Sobic001G290000 Sobic008G160700 Sobic008G160700 Sobic010G078100--Sobic008G160700 Sobic002G303000 Sobic002G303000 Sobic010G078100--Sobic002G303000 Sobic010G078100--Sobic009G121100 Sobic010G078100--Sobic006G214500 Sobic009G027000 Sobic009G027000 Sobic010G078100--Sobic009G027000 Sobic001G359400 Sobic001G359400 Sobic010G078100--Sobic001G359400 Sobic001G373100 Sobic001G373100 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic010G078100--Sobic004G295800 Sobic003G313400 Sobic003G313400 Sobic004G354400--Sobic003G313400 Sobic004G354400--Sobic004G295800 Sobic004G354400--Sobic010G250200 Sobic004G354400--Sobic001G359400 Sobic004G354400--Sobic010G078100 Sobic010G188400 Sobic010G188400 Sobic004G354400--Sobic010G188400 Sobic004G354400--Sobic008G191100 Sobic003G179600 Sobic003G179600 Sobic004G354400--Sobic003G179600 Sobic004G163300 Sobic004G163300 Sobic004G354400--Sobic004G163300
Octagon: transcription factors


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