Gene annotation
Transcriptome id Sobic.005G103400.1
Synonym Sb05g009356
Functional annotation expressed protein
UniProt A0A1B6PRH4
Pfam PF10218
Panther DB PTHR13481
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59390 : -
RAP-DB (Rice) LOC_Os11g16560.1 : expressed protein
MaizeGDB (Corn) Zm00025a053899
Brachypodium KQJ88672 , KQJ88671 , KQJ88673 , PNT63730
Barley HORVU4Hr1G014070.3 , HORVU4Hr1G014070.6 , HORVU4Hr1G014070.4 , HORVU4Hr1G014070.5 , HORVU4Hr1G014070.2 , HORVU4Hr1G014070.1
Wheat TraesCS4D02G081400 , TraesCS4D02G081400 , TraesCS4B02G083300 , TraesCS4A02G232500 , TraesCS4A02G232500 , TraesCS4B02G083300
Populus -


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cDNA sequences
Sobic.005G103400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
2 Sobic.006G137600 AT hook motif family protein, expressed -
3 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
4 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
5 Sobic.004G030800 expressed protein -
6 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.002G425500 ATPOT1, putative, expressed -
8 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
9 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
10 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
11 Sobic.001G417500 expressed protein -
12 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
13 Sobic.004G124300 tesmin/TSO1-like CXC domain containing protein, expressed -
14 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
15 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
16 Sobic.008G092800 expressed protein -
17 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
18 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
19 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
20 Sobic.007G094500 KH domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G103400 Sobic005G103400 Sobic002G043100 Sobic002G043100 Sobic005G103400--Sobic002G043100 Sobic006G137600 Sobic006G137600 Sobic005G103400--Sobic006G137600 Sobic007G171100 Sobic007G171100 Sobic005G103400--Sobic007G171100 Sobic009G185700 Sobic009G185700 Sobic005G103400--Sobic009G185700 Sobic004G030800 Sobic004G030800 Sobic005G103400--Sobic004G030800 Sobic001G172700 Sobic001G172700 Sobic005G103400--Sobic001G172700 Sobic002G425500 Sobic002G425500 Sobic005G103400--Sobic002G425500 Sobic001G451300 Sobic001G451300 Sobic005G103400--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic005G103400--Sobic010G053600 Sobic004G107200 Sobic004G107200 Sobic002G043100--Sobic004G107200 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G399800 Sobic002G399800 Sobic002G043100--Sobic002G399800 Sobic010G262100 Sobic010G262100 Sobic002G043100--Sobic010G262100 Sobic006G269800 Sobic006G269800 Sobic002G043100--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic002G043100--Sobic003G309050 Sobic002G043100--Sobic002G425500 Sobic001G393900 Sobic001G393900 Sobic002G043100--Sobic001G393900 Sobic006G137600--Sobic010G053600 Sobic001G020000 Sobic001G020000 Sobic006G137600--Sobic001G020000 Sobic001G352900 Sobic001G352900 Sobic006G137600--Sobic001G352900 Sobic009G142000 Sobic009G142000 Sobic006G137600--Sobic009G142000 Sobic006G137600--Sobic001G172700 Sobic006G137600--Sobic007G171100 Sobic006G137600--Sobic001G451300 Sobic002G412700 Sobic002G412700 Sobic006G137600--Sobic002G412700 Sobic006G137600--Sobic002G043100 Sobic007G071400 Sobic007G071400 Sobic007G171100--Sobic007G071400 Sobic007G171100--Sobic010G053600 Sobic007G171100--Sobic001G352900 Sobic007G171100--Sobic002G043100 Sobic008G017100 Sobic008G017100 Sobic007G171100--Sobic008G017100 Sobic004G019200 Sobic004G019200 Sobic007G171100--Sobic004G019200 Sobic010G174700 Sobic010G174700 Sobic007G171100--Sobic010G174700 Sobic007G171100--Sobic001G020000 Sobic006G036100 Sobic006G036100 Sobic007G171100--Sobic006G036100 Sobic001G455600 Sobic001G455600 Sobic009G185700--Sobic001G455600 Sobic002G344000 Sobic002G344000 Sobic009G185700--Sobic002G344000 Sobic004G134200 Sobic004G134200 Sobic009G185700--Sobic004G134200 Sobic009G185700--Sobic002G425500 Sobic003G441900 Sobic003G441900 Sobic009G185700--Sobic003G441900 Sobic005G142800 Sobic005G142800 Sobic009G185700--Sobic005G142800 Sobic002G211800 Sobic002G211800 Sobic009G185700--Sobic002G211800 Sobic003G077700 Sobic003G077700 Sobic009G185700--Sobic003G077700 Sobic009G215500 Sobic009G215500 Sobic009G185700--Sobic009G215500 Sobic010G003400 Sobic010G003400 Sobic004G030800--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic004G030800--Sobic001G052400 Sobic004G025800 Sobic004G025800 Sobic004G030800--Sobic004G025800 Sobic008G051200 Sobic008G051200 Sobic004G030800--Sobic008G051200 Sobic007G075800 Sobic007G075800 Sobic004G030800--Sobic007G075800 Sobic003G260400 Sobic003G260400 Sobic004G030800--Sobic003G260400 Sobic009G101200 Sobic009G101200 Sobic004G030800--Sobic009G101200 Sobic004G030800--Sobic010G053600 Sobic001G004400 Sobic001G004400 Sobic004G030800--Sobic001G004400 Sobic001G172700--Sobic004G134200 Sobic001G172700--Sobic009G215500 Sobic001G172700--Sobic004G025800 Sobic001G172700--Sobic006G137600 Sobic003G434700 Sobic003G434700 Sobic001G172700--Sobic003G434700 Sobic001G172700--Sobic010G053600 Sobic008G044100 Sobic008G044100 Sobic001G172700--Sobic008G044100 Sobic001G172700--Sobic005G142800 Sobic010G051700 Sobic010G051700 Sobic001G172700--Sobic010G051700 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic001G451300--Sobic003G309050 Sobic001G451300--Sobic010G174700 Sobic002G371600 Sobic002G371600 Sobic001G451300--Sobic002G371600 Sobic001G451300--Sobic009G142000 Sobic001G451300--Sobic002G399800 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic009G109200 Sobic009G109200 Sobic010G053600--Sobic009G109200 Sobic010G053600--Sobic001G004400 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400
Octagon: transcription factors


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