Gene annotation
Transcriptome id Sobic.008G174100.2,Sobic.008G174100.1,Sobic.008G174100.3
Synonym Sb08g021870
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RGH2B, putative, expressed
UniProt A0A1B6PEB4
Pfam PF03106 PF00931 PF00931 PF03106
Panther DB PTHR23155 PTHR23155:SF641 PTHR23155:SF641 PTHR23155
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology GO:0003700; DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G46710 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os05g40150.1 : RGH2B, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G029800 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
2 Sobic.010G038100 OsFBDUF30 - F-box and DUF domain containing protein, expressed -
3 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
4 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
5 Sobic.006G220000 bromodomain containing protein, expressed -
6 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
7 Sobic.001G298900 agenet domain containing protein, putative, expressed -
8 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
9 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
10 Sobic.002G169400 Leucine Rich Repeat family protein, expressed -
11 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
12 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
13 Sobic.003G016900 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
14 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
15 Sobic.008G016300 expressed protein -
16 Sobic.001G518100 DNA-binding bromodomain-containing protein, putative, expressed K11723: bromodomain-containing protein 7
17 Sobic.009G256300 DNA binding protein, putative, expressed -
18 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
19 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
20 Sobic.003G388100 expressed protein -


Gene co-expression network
sample Sobic008G174100 Sobic008G174100 Sobic005G029800 Sobic005G029800 Sobic008G174100--Sobic005G029800 Sobic010G038100 Sobic010G038100 Sobic008G174100--Sobic010G038100 Sobic003G389200 Sobic003G389200 Sobic008G174100--Sobic003G389200 Sobic004G178500 Sobic004G178500 Sobic008G174100--Sobic004G178500 Sobic006G220000 Sobic006G220000 Sobic008G174100--Sobic006G220000 Sobic001G230000 Sobic001G230000 Sobic008G174100--Sobic001G230000 Sobic001G298900 Sobic001G298900 Sobic008G174100--Sobic001G298900 Sobic006G119400 Sobic006G119400 Sobic008G174100--Sobic006G119400 Sobic006G050700 Sobic006G050700 Sobic008G174100--Sobic006G050700 Sobic003G193200 Sobic003G193200 Sobic005G029800--Sobic003G193200 Sobic002G031700 Sobic002G031700 Sobic005G029800--Sobic002G031700 Sobic001G501300 Sobic001G501300 Sobic005G029800--Sobic001G501300 Sobic002G339300 Sobic002G339300 Sobic005G029800--Sobic002G339300 Sobic001G261900 Sobic001G261900 Sobic005G029800--Sobic001G261900 Sobic010G110332 Sobic010G110332 Sobic005G029800--Sobic010G110332 Sobic001G207200 Sobic001G207200 Sobic005G029800--Sobic001G207200 Sobic005G029800--Sobic008G174100 Sobic010G231100 Sobic010G231100 Sobic005G029800--Sobic010G231100 Sobic005G200900 Sobic005G200900 Sobic010G038100--Sobic005G200900 Sobic010G026600 Sobic010G026600 Sobic010G038100--Sobic010G026600 Sobic001G440100 Sobic001G440100 Sobic010G038100--Sobic001G440100 Sobic004G235300 Sobic004G235300 Sobic010G038100--Sobic004G235300 Sobic006G080400 Sobic006G080400 Sobic010G038100--Sobic006G080400 Sobic008G002500 Sobic008G002500 Sobic010G038100--Sobic008G002500 Sobic001G501800 Sobic001G501800 Sobic010G038100--Sobic001G501800 Sobic003G101700 Sobic003G101700 Sobic010G038100--Sobic003G101700 Sobic009G185700 Sobic009G185700 Sobic010G038100--Sobic009G185700 Sobic009G256300 Sobic009G256300 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G360400 Sobic003G360400 Sobic003G389200--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic003G389200--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic001G540400 Sobic001G540400 Sobic003G389200--Sobic001G540400 Sobic007G105100 Sobic007G105100 Sobic003G389200--Sobic007G105100 Sobic003G389200--Sobic001G230000 Sobic004G178500--Sobic001G298900 Sobic002G198200 Sobic002G198200 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic008G044100 Sobic008G044100 Sobic004G178500--Sobic008G044100 Sobic006G133900 Sobic006G133900 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic006G270700 Sobic006G270700 Sobic004G178500--Sobic006G270700 Sobic004G178500--Sobic001G365900 Sobic003G388100 Sobic003G388100 Sobic004G178500--Sobic003G388100 Sobic006G052300 Sobic006G052300 Sobic006G220000--Sobic006G052300 Sobic004G039200 Sobic004G039200 Sobic006G220000--Sobic004G039200 Sobic004G264300 Sobic004G264300 Sobic006G220000--Sobic004G264300 Sobic009G065100 Sobic009G065100 Sobic006G220000--Sobic009G065100 Sobic007G161000 Sobic007G161000 Sobic006G220000--Sobic007G161000 Sobic006G274600 Sobic006G274600 Sobic006G220000--Sobic006G274600 Sobic002G151600 Sobic002G151600 Sobic006G220000--Sobic002G151600 Sobic008G011100 Sobic008G011100 Sobic006G220000--Sobic008G011100 Sobic007G117400 Sobic007G117400 Sobic006G220000--Sobic007G117400 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G230000--Sobic008G001200 Sobic004G276400 Sobic004G276400 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G230000--Sobic001G298900 Sobic001G230000--Sobic008G044100 Sobic001G298900--Sobic001G230000 Sobic006G219600 Sobic006G219600 Sobic001G298900--Sobic006G219600 Sobic001G298900--Sobic002G198200 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic001G298900--Sobic008G044100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic010G079500 Sobic010G079500 Sobic006G119400--Sobic010G079500 Sobic006G119400--Sobic005G142800 Sobic004G107200 Sobic004G107200 Sobic006G119400--Sobic004G107200 Sobic010G053600 Sobic010G053600 Sobic006G119400--Sobic010G053600 Sobic002G043100 Sobic002G043100 Sobic006G119400--Sobic002G043100 Sobic006G049900 Sobic006G049900 Sobic006G119400--Sobic006G049900 Sobic008G132900 Sobic008G132900 Sobic006G119400--Sobic008G132900 Sobic008G016300 Sobic008G016300 Sobic006G119400--Sobic008G016300 Sobic006G119400--Sobic001G298900 Sobic006G050700--Sobic003G155100 Sobic006G050700--Sobic006G219600 Sobic006G050700--Sobic008G001200 Sobic009G201300 Sobic009G201300 Sobic006G050700--Sobic009G201300 Sobic002G346200 Sobic002G346200 Sobic006G050700--Sobic002G346200 Sobic004G042200 Sobic004G042200 Sobic006G050700--Sobic004G042200 Sobic006G050700--Sobic010G206900 Sobic006G050700--Sobic001G230000 Sobic001G527800 Sobic001G527800 Sobic006G050700--Sobic001G527800
Octagon: transcription factors


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