Gene annotation
Transcriptome id Sobic.010G254200.3,Sobic.010G254200.6,Sobic.010G254200.1,Sobic.010G254200.4,Sobic.010G254200.5,Sobic.010G254200.2
Synonym Sb10g029190, SPL2, SbSBP18
Functional annotation "Highest expression level in primordial inflorescence, up-regulation in roots in response to exogenous ABA and PEG" (PubMedID : 27501690)
OsSPL12 - SBP-box gene family member, expressed
UniProt A0A1W0VUS8 , A0A194YLE6
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G43270 : squamosa promoter binding protein-like 2
RAP-DB (Rice) LOC_Os06g49010.1,LOC_Os06g49010.3,LOC_Os06g49010.6,LOC_Os06g49010.5,LOC_Os06g49010.2 : OsSPL12 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a018395
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G254200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G204000 expressed protein -
2 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
3 Sobic.004G036900 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL3 - SBP-box gene family member, expressed -
4 Sobic.005G095700 Up-regulated in Setosphaeria turcica resistant genotype GA06/18 when S. turcica is inoculated (PubMedID : 22050783)@"belonged to one of the 20 ancestral gene families identified across sorghum, maize and rice, including the maize orthologue which was found to have upregulated transcripts after fungal challenge of Setosphaeria turcica"(PubMedID : 25928459)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@NB-ARC domain containing protein, expressed K13457: RPM1, disease resistance protein RPM1
5 Sobic.001G420500 spotted leaf 11, putative, expressed -
6 Sobic.001G083400 expressed protein -
7 Sobic.004G134200 GTP binding protein, putative, expressed -
8 Sobic.001G026500 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL6 - SBP-box gene family member, expressed -
9 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
10 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
11 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
12 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
13 Sobic.006G013700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
14 Sobic.007G117400 expressed protein -
15 Sobic.010G277500 expressed protein -
16 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
17 Sobic.003G138500 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
18 Sobic.003G029100 frigida, putative, expressed -
19 Sobic.004G182900 PHD finger protein, putative, expressed -
20 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3


Gene co-expression network
sample Sobic010G254200 Sobic010G254200 Sobic001G204000 Sobic001G204000 Sobic010G254200--Sobic001G204000 Sobic007G203200 Sobic007G203200 Sobic010G254200--Sobic007G203200 Sobic004G036900 Sobic004G036900 Sobic010G254200--Sobic004G036900 Sobic005G095700 Sobic005G095700 Sobic010G254200--Sobic005G095700 Sobic001G420500 Sobic001G420500 Sobic010G254200--Sobic001G420500 Sobic001G083400 Sobic001G083400 Sobic010G254200--Sobic001G083400 Sobic004G134200 Sobic004G134200 Sobic010G254200--Sobic004G134200 Sobic001G026500 Sobic001G026500 Sobic010G254200--Sobic001G026500 Sobic002G391600 Sobic002G391600 Sobic010G254200--Sobic002G391600 Sobic001G204000--Sobic001G083400 Sobic010G010700 Sobic010G010700 Sobic001G204000--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic001G204000--Sobic001G365900 Sobic002G134200 Sobic002G134200 Sobic001G204000--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic001G204000--Sobic002G133400 Sobic005G014300 Sobic005G014300 Sobic001G204000--Sobic005G014300 Sobic003G389200 Sobic003G389200 Sobic001G204000--Sobic003G389200 Sobic002G309600 Sobic002G309600 Sobic001G204000--Sobic002G309600 Sobic001G289600 Sobic001G289600 Sobic001G204000--Sobic001G289600 Sobic010G145800 Sobic010G145800 Sobic007G203200--Sobic010G145800 Sobic009G050900 Sobic009G050900 Sobic007G203200--Sobic009G050900 Sobic001G407200 Sobic001G407200 Sobic007G203200--Sobic001G407200 Sobic001G281600 Sobic001G281600 Sobic007G203200--Sobic001G281600 Sobic010G140400 Sobic010G140400 Sobic007G203200--Sobic010G140400 Sobic010G279700 Sobic010G279700 Sobic007G203200--Sobic010G279700 Sobic005G106500 Sobic005G106500 Sobic007G203200--Sobic005G106500 Sobic003G401100 Sobic003G401100 Sobic007G203200--Sobic003G401100 Sobic006G118700 Sobic006G118700 Sobic007G203200--Sobic006G118700 Sobic003G332800 Sobic003G332800 Sobic004G036900--Sobic003G332800 Sobic003G148000 Sobic003G148000 Sobic004G036900--Sobic003G148000 Sobic004G039200 Sobic004G039200 Sobic004G036900--Sobic004G039200 Sobic001G456900 Sobic001G456900 Sobic004G036900--Sobic001G456900 Sobic001G274200 Sobic001G274200 Sobic004G036900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic004G036900--Sobic003G429650 Sobic004G182900 Sobic004G182900 Sobic004G036900--Sobic004G182900 Sobic010G277500 Sobic010G277500 Sobic004G036900--Sobic010G277500 Sobic007G099100 Sobic007G099100 Sobic004G036900--Sobic007G099100 Sobic005G191900 Sobic005G191900 Sobic005G095700--Sobic005G191900 Sobic008G028700 Sobic008G028700 Sobic005G095700--Sobic008G028700 Sobic001G219600 Sobic001G219600 Sobic005G095700--Sobic001G219600 Sobic001G071400 Sobic001G071400 Sobic005G095700--Sobic001G071400 Sobic009G260500 Sobic009G260500 Sobic005G095700--Sobic009G260500 Sobic004G009600 Sobic004G009600 Sobic005G095700--Sobic004G009600 Sobic009G166100 Sobic009G166100 Sobic005G095700--Sobic009G166100 Sobic010G209400 Sobic010G209400 Sobic005G095700--Sobic010G209400 Sobic001G363500 Sobic001G363500 Sobic005G095700--Sobic001G363500 Sobic002G402600 Sobic002G402600 Sobic001G420500--Sobic002G402600 Sobic001G420500--Sobic001G083400 Sobic009G191100 Sobic009G191100 Sobic001G420500--Sobic009G191100 Sobic001G486300 Sobic001G486300 Sobic001G420500--Sobic001G486300 Sobic001G420500--Sobic001G204000 Sobic001G375700 Sobic001G375700 Sobic001G420500--Sobic001G375700 Sobic005G023900 Sobic005G023900 Sobic001G420500--Sobic005G023900 Sobic001G420500--Sobic010G277500 Sobic010G016900 Sobic010G016900 Sobic001G420500--Sobic010G016900 Sobic007G065400 Sobic007G065400 Sobic001G083400--Sobic007G065400 Sobic001G083400--Sobic002G309600 Sobic009G210500 Sobic009G210500 Sobic001G083400--Sobic009G210500 Sobic001G083400--Sobic010G277500 Sobic001G026200 Sobic001G026200 Sobic001G083400--Sobic001G026200 Sobic008G113100 Sobic008G113100 Sobic001G083400--Sobic008G113100 Sobic010G069100 Sobic010G069100 Sobic001G083400--Sobic010G069100 Sobic007G117400 Sobic007G117400 Sobic001G083400--Sobic007G117400 Sobic009G040600 Sobic009G040600 Sobic001G083400--Sobic009G040600 Sobic008G044100 Sobic008G044100 Sobic004G134200--Sobic008G044100 Sobic001G374100 Sobic001G374100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic004G134200--Sobic010G010700 Sobic009G215500 Sobic009G215500 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic002G362800 Sobic002G362800 Sobic001G026500--Sobic002G362800 Sobic003G293200 Sobic003G293200 Sobic001G026500--Sobic003G293200 Sobic001G026500--Sobic006G118700 Sobic001G111600 Sobic001G111600 Sobic001G026500--Sobic001G111600 Sobic010G112100 Sobic010G112100 Sobic001G026500--Sobic010G112100 Sobic001G102700 Sobic001G102700 Sobic001G026500--Sobic001G102700 Sobic005G128400 Sobic005G128400 Sobic001G026500--Sobic005G128400 Sobic007G183900 Sobic007G183900 Sobic001G026500--Sobic007G183900 Sobic005G220000 Sobic005G220000 Sobic001G026500--Sobic005G220000 Sobic010G053600 Sobic010G053600 Sobic002G391600--Sobic010G053600 Sobic001G352900 Sobic001G352900 Sobic002G391600--Sobic001G352900 Sobic008G016300 Sobic008G016300 Sobic002G391600--Sobic008G016300 Sobic004G242400 Sobic004G242400 Sobic002G391600--Sobic004G242400 Sobic002G391600--Sobic009G256300 Sobic010G105200 Sobic010G105200 Sobic002G391600--Sobic010G105200 Sobic009G109200 Sobic009G109200 Sobic002G391600--Sobic009G109200 Sobic002G391600--Sobic010G010700 Sobic002G133300 Sobic002G133300 Sobic002G391600--Sobic002G133300
Octagon: transcription factors


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