Gene annotation
Transcriptome id Sobic.006G164200.2,Sobic.006G164200.4,Sobic.006G164200.3,Sobic.006G164200.1
Synonym YSL2, Sb06g024030, ATYSL2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
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UniProt A0A1Z5RE79 , A0A1Z5RE88 , A0A1Z5RE78
Pfam PF03169
Panther DB PTHR31645 PTHR31645:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53550 : YELLOW STRIPE like 6,YELLOW STRIPE like 3
RAP-DB (Rice) LOC_Os04g45860.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a020927 , Zm00025a010381 , Zm00025a056641
Brachypodium KQK00558 , KQJ82291 , PNT61582 , KQJ83861 , KQJ83860 , KQJ83865 , PNT61581 , KQJ83862
Barley HORVU2Hr1G092880.8 , HORVU2Hr1G092880.7 , HORVU2Hr1G092880.6 , HORVU2Hr1G092880.5 , HORVU2Hr1G092880.4 , HORVU2Hr1G092880.3 , HORVU2Hr1G092880.2 , HORVU2Hr1G092810.12 , HORVU2Hr1G092810.13 , HORVU2Hr1G092810.10 , HORVU2Hr1G092810.11 , HORVU2Hr1G092810.16 , HORVU2Hr1G092810.17 , HORVU2Hr1G092810.14 , HORVU2Hr1G092810.15 , HORVU2Hr1G092810.18 , HORVU2Hr1G092810.19 , HORVU2Hr1G092800.9 , HORVU2Hr1G092800.8 , HORVU6Hr1G045460.1 , HORVU2Hr1G092810.7 , HORVU2Hr1G092800.10 , HORVU2Hr1G092810.20 , HORVU2Hr1G092800.7 , HORVU2Hr1G092800.6 , HORVU2Hr1G092800.5 , HORVU2Hr1G092800.4 , HORVU2Hr1G092800.3 , HORVU2Hr1G092810.2 , HORVU2Hr1G092800.2 , HORVU2Hr1G092810.3 , HORVU2Hr1G092800.1 , HORVU2Hr1G092810.4 , HORVU2Hr1G092810.5 , HORVU2Hr1G092810.8 , HORVU2Hr1G092810.9 , HORVU2Hr1G092810.1 , HORVU2Hr1G092810.6
Wheat TraesCS2D02G387800 , TraesCS2A02G391000 , TraesCS2A02G391000 , TraesCS2A02G391000 , TraesCS2D02G387700 , TraesCS2D02G387700 , TraesCS2D02G387700 , TraesCS6B02G283900 , TraesCS2A02G390800 , TraesCS6B02G283900 , TraesCS2B02G408500 , TraesCS2D02G387600 , TraesCS2D02G387600 , TraesCS2D02G387600 , TraesCS6D02G223000 , TraesCS2D02G387800 , TraesCS2B02G408000 , TraesCS2B02G408000 , TraesCS2B02G407900 , TraesCS2B02G407900 , TraesCS2A02G391100 , TraesCS2A02G391100
Populus -


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cDNA sequences
Sobic.006G164200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G265200 zinc finger, RING-type, putative, expressed K17592: sacsin
2 Sobic.001G093800 WD domain containing protein, putative, expressed -
3 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.006G245100 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
6 Sobic.001G111800 3,4-dihydroxy-2-butanone kinase, putative, expressed K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)
7 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
8 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
9 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
10 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
11 Sobic.007G000200 expressed protein -
12 Sobic.010G004100 expressed protein -
13 Sobic.006G083300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K18995: ATP-dependent RNA helicase DHX29
14 Sobic.002G327000 villin protein, putative, expressed -
15 Sobic.004G040500 expressed protein -
16 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
17 Sobic.002G029100 GYF domain containing protein, putative, expressed -
18 Sobic.006G219300 ABC transporter family protein, putative, expressed -
19 Sobic.004G145000 importin-8, putative, expressed -
20 Sobic.002G306700 expressed protein -


Gene co-expression network
sample Sobic006G164200 Sobic006G164200 Sobic006G265200 Sobic006G265200 Sobic006G164200--Sobic006G265200 Sobic001G093800 Sobic001G093800 Sobic006G164200--Sobic001G093800 Sobic001G430400 Sobic001G430400 Sobic006G164200--Sobic001G430400 Sobic009G069000 Sobic009G069000 Sobic006G164200--Sobic009G069000 Sobic006G245100 Sobic006G245100 Sobic006G164200--Sobic006G245100 Sobic001G111800 Sobic001G111800 Sobic006G164200--Sobic001G111800 Sobic002G164200 Sobic002G164200 Sobic006G164200--Sobic002G164200 Sobic001G137000 Sobic001G137000 Sobic006G164200--Sobic001G137000 Sobic009G182600 Sobic009G182600 Sobic006G164200--Sobic009G182600 Sobic007G098500 Sobic007G098500 Sobic006G265200--Sobic007G098500 Sobic008G092600 Sobic008G092600 Sobic006G265200--Sobic008G092600 Sobic010G105200 Sobic010G105200 Sobic006G265200--Sobic010G105200 Sobic001G117200 Sobic001G117200 Sobic006G265200--Sobic001G117200 Sobic001G287500 Sobic001G287500 Sobic006G265200--Sobic001G287500 Sobic002G147600 Sobic002G147600 Sobic006G265200--Sobic002G147600 Sobic004G040500 Sobic004G040500 Sobic006G265200--Sobic004G040500 Sobic007G163100 Sobic007G163100 Sobic006G265200--Sobic007G163100 Sobic003G233400 Sobic003G233400 Sobic006G265200--Sobic003G233400 Sobic009G118900 Sobic009G118900 Sobic001G093800--Sobic009G118900 Sobic010G139500 Sobic010G139500 Sobic001G093800--Sobic010G139500 Sobic003G029600 Sobic003G029600 Sobic001G093800--Sobic003G029600 Sobic002G340900 Sobic002G340900 Sobic001G093800--Sobic002G340900 Sobic004G204100 Sobic004G204100 Sobic001G093800--Sobic004G204100 Sobic001G093800--Sobic001G287500 Sobic001G093800--Sobic003G233400 Sobic003G334700 Sobic003G334700 Sobic001G093800--Sobic003G334700 Sobic001G437400 Sobic001G437400 Sobic001G093800--Sobic001G437400 Sobic002G256700 Sobic002G256700 Sobic001G430400--Sobic002G256700 Sobic008G144900 Sobic008G144900 Sobic001G430400--Sobic008G144900 Sobic008G087866 Sobic008G087866 Sobic001G430400--Sobic008G087866 Sobic001G191700 Sobic001G191700 Sobic001G430400--Sobic001G191700 Sobic001G430400--Sobic001G117200 Sobic006G032300 Sobic006G032300 Sobic001G430400--Sobic006G032300 Sobic007G000200 Sobic007G000200 Sobic001G430400--Sobic007G000200 Sobic001G277900 Sobic001G277900 Sobic001G430400--Sobic001G277900 Sobic002G371300 Sobic002G371300 Sobic001G430400--Sobic002G371300 Sobic007G028100 Sobic007G028100 Sobic009G069000--Sobic007G028100 Sobic009G069000--Sobic007G000200 Sobic006G179400 Sobic006G179400 Sobic009G069000--Sobic006G179400 Sobic006G139100 Sobic006G139100 Sobic009G069000--Sobic006G139100 Sobic001G265600 Sobic001G265600 Sobic009G069000--Sobic001G265600 Sobic001G293700 Sobic001G293700 Sobic009G069000--Sobic001G293700 Sobic002G245000 Sobic002G245000 Sobic009G069000--Sobic002G245000 Sobic005G197100 Sobic005G197100 Sobic009G069000--Sobic005G197100 Sobic003G089000 Sobic003G089000 Sobic009G069000--Sobic003G089000 Sobic001G534600 Sobic001G534600 Sobic006G245100--Sobic001G534600 Sobic002G119400 Sobic002G119400 Sobic006G245100--Sobic002G119400 Sobic004G154300 Sobic004G154300 Sobic006G245100--Sobic004G154300 Sobic002G105200 Sobic002G105200 Sobic006G245100--Sobic002G105200 Sobic010G186600 Sobic010G186600 Sobic006G245100--Sobic010G186600 Sobic006G087100 Sobic006G087100 Sobic006G245100--Sobic006G087100 Sobic004G091200 Sobic004G091200 Sobic006G245100--Sobic004G091200 Sobic001G039500 Sobic001G039500 Sobic006G245100--Sobic001G039500 Sobic002G029100 Sobic002G029100 Sobic006G245100--Sobic002G029100 Sobic001G111800--Sobic007G000200 Sobic001G015800 Sobic001G015800 Sobic001G111800--Sobic001G015800 Sobic004G177300 Sobic004G177300 Sobic001G111800--Sobic004G177300 Sobic003G046300 Sobic003G046300 Sobic001G111800--Sobic003G046300 Sobic001G111800--Sobic001G293700 Sobic004G145000 Sobic004G145000 Sobic001G111800--Sobic004G145000 Sobic001G111800--Sobic001G430400 Sobic006G115600 Sobic006G115600 Sobic001G111800--Sobic006G115600 Sobic001G111800--Sobic007G163100 Sobic007G183300 Sobic007G183300 Sobic002G164200--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic002G164200--Sobic003G062300 Sobic002G164200--Sobic009G182600 Sobic006G224800 Sobic006G224800 Sobic002G164200--Sobic006G224800 Sobic001G051700 Sobic001G051700 Sobic002G164200--Sobic001G051700 Sobic005G133800 Sobic005G133800 Sobic002G164200--Sobic005G133800 Sobic002G164200--Sobic002G029100 Sobic002G164200--Sobic007G000200 Sobic005G200800 Sobic005G200800 Sobic002G164200--Sobic005G200800 Sobic001G137000--Sobic008G092600 Sobic001G137000--Sobic007G098500 Sobic001G137000--Sobic003G233400 Sobic003G312100 Sobic003G312100 Sobic001G137000--Sobic003G312100 Sobic001G137000--Sobic001G117200 Sobic002G396500 Sobic002G396500 Sobic001G137000--Sobic002G396500 Sobic001G050600 Sobic001G050600 Sobic001G137000--Sobic001G050600 Sobic008G098900 Sobic008G098900 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic009G126300 Sobic009G126300 Sobic009G182600--Sobic009G126300 Sobic002G179400 Sobic002G179400 Sobic009G182600--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic009G182600--Sobic001G493700 Sobic009G182600--Sobic004G040500 Sobic009G182600--Sobic004G204100 Sobic009G182600--Sobic002G164200 Sobic009G255600 Sobic009G255600 Sobic009G182600--Sobic009G255600 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900
Octagon: transcription factors


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