Gene annotation
Transcriptome id Sobic.009G132800.3,Sobic.009G132800.1
Synonym MBD1, Sb09g019910
Functional annotation methyl-binding domain protein MBD, putative, expressed
UniProt C5YXQ2
Pfam PF01429 PF07496
Panther DB PTHR12396
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G22745 : methyl-CPG-binding domain 1
RAP-DB (Rice) LOC_Os05g33550.1 : methyl-binding domain protein MBD, putative, expressed
MaizeGDB (Corn) Zm00025a037487
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.009G132800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G054700 expressed protein K10745: ribonuclease H2 subunit C
2 Sobic.009G216700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
3 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
4 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
5 Sobic.006G219000 OsFBW1 - F-box domain and WD40 repeat containing protein, expressed -
6 Sobic.004G141700 expressed protein -
7 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
8 Sobic.001G538500 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
10 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
11 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
12 Sobic.009G156500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytoplasmic membrane protein, putative, expressed -
13 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
14 Sobic.001G050400 expressed protein -
15 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
16 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
17 Sobic.004G021000 cyclin-dependent kinase A-2, putative, expressed K02206: cyclin-dependent kinase 2
18 Sobic.001G216100 expressed protein -
19 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
20 Sobic.010G197900 expressed protein -


Gene co-expression network
sample Sobic009G132800 Sobic009G132800 Sobic004G054700 Sobic004G054700 Sobic009G132800--Sobic004G054700 Sobic009G216700 Sobic009G216700 Sobic009G132800--Sobic009G216700 Sobic001G008100 Sobic001G008100 Sobic009G132800--Sobic001G008100 Sobic007G012900 Sobic007G012900 Sobic009G132800--Sobic007G012900 Sobic006G219000 Sobic006G219000 Sobic009G132800--Sobic006G219000 Sobic004G141700 Sobic004G141700 Sobic009G132800--Sobic004G141700 Sobic004G256300 Sobic004G256300 Sobic009G132800--Sobic004G256300 Sobic001G538500 Sobic001G538500 Sobic009G132800--Sobic001G538500 Sobic002G401700 Sobic002G401700 Sobic009G132800--Sobic002G401700 Sobic001G485300 Sobic001G485300 Sobic004G054700--Sobic001G485300 Sobic004G054700--Sobic001G008100 Sobic009G209900 Sobic009G209900 Sobic004G054700--Sobic009G209900 Sobic006G041800 Sobic006G041800 Sobic004G054700--Sobic006G041800 Sobic002G276800 Sobic002G276800 Sobic004G054700--Sobic002G276800 Sobic003G085500 Sobic003G085500 Sobic004G054700--Sobic003G085500 Sobic003G395300 Sobic003G395300 Sobic004G054700--Sobic003G395300 Sobic001G050400 Sobic001G050400 Sobic004G054700--Sobic001G050400 Sobic001G061200 Sobic001G061200 Sobic004G054700--Sobic001G061200 Sobic009G216700--Sobic006G041800 Sobic003G388700 Sobic003G388700 Sobic009G216700--Sobic003G388700 Sobic009G216700--Sobic007G012900 Sobic009G216700--Sobic001G008100 Sobic009G216700--Sobic003G395300 Sobic006G095200 Sobic006G095200 Sobic009G216700--Sobic006G095200 Sobic010G002800 Sobic010G002800 Sobic009G216700--Sobic010G002800 Sobic009G191400 Sobic009G191400 Sobic009G216700--Sobic009G191400 Sobic007G206300 Sobic007G206300 Sobic009G216700--Sobic007G206300 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic002G079700 Sobic002G079700 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic001G008100--Sobic002G276800 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic007G012900--Sobic003G276100 Sobic007G012900--Sobic002G401700 Sobic007G012900--Sobic001G008100 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic007G012900--Sobic009G191400 Sobic007G012900--Sobic002G079700 Sobic003G121300 Sobic003G121300 Sobic006G219000--Sobic003G121300 Sobic009G207200 Sobic009G207200 Sobic006G219000--Sobic009G207200 Sobic007G189000 Sobic007G189000 Sobic006G219000--Sobic007G189000 Sobic001G484700 Sobic001G484700 Sobic006G219000--Sobic001G484700 Sobic001G507400 Sobic001G507400 Sobic006G219000--Sobic001G507400 Sobic001G294300 Sobic001G294300 Sobic006G219000--Sobic001G294300 Sobic001G216100 Sobic001G216100 Sobic006G219000--Sobic001G216100 Sobic010G068700 Sobic010G068700 Sobic006G219000--Sobic010G068700 Sobic006G121300 Sobic006G121300 Sobic006G219000--Sobic006G121300 Sobic009G232400 Sobic009G232400 Sobic004G141700--Sobic009G232400 Sobic001G007200 Sobic001G007200 Sobic004G141700--Sobic001G007200 Sobic010G193800 Sobic010G193800 Sobic004G141700--Sobic010G193800 Sobic001G402300 Sobic001G402300 Sobic004G141700--Sobic001G402300 Sobic001G226100 Sobic001G226100 Sobic004G141700--Sobic001G226100 Sobic001G054200 Sobic001G054200 Sobic004G141700--Sobic001G054200 Sobic010G018700 Sobic010G018700 Sobic004G141700--Sobic010G018700 Sobic010G083700 Sobic010G083700 Sobic004G141700--Sobic010G083700 Sobic001G439600 Sobic001G439600 Sobic004G141700--Sobic001G439600 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic002G217500 Sobic002G217500 Sobic001G538500--Sobic002G217500 Sobic001G538500--Sobic004G039400 Sobic003G016300 Sobic003G016300 Sobic001G538500--Sobic003G016300 Sobic009G206600 Sobic009G206600 Sobic001G538500--Sobic009G206600 Sobic001G538500--Sobic001G008100 Sobic001G538500--Sobic010G040900 Sobic006G203900 Sobic006G203900 Sobic001G538500--Sobic006G203900 Sobic010G231700 Sobic010G231700 Sobic001G538500--Sobic010G231700 Sobic001G538500--Sobic003G388700 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic002G401700--Sobic007G012900 Sobic004G159000 Sobic004G159000 Sobic002G401700--Sobic004G159000 Sobic007G117800 Sobic007G117800 Sobic002G401700--Sobic007G117800 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G401700--Sobic002G276800 Sobic001G378200 Sobic001G378200 Sobic002G401700--Sobic001G378200
Octagon: transcription factors


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